Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QMZ19_RS05075 Genome accession   NZ_CP095723
Coordinates   920124..921815 (+) Length   563 a.a.
NCBI ID   WP_185344228.1    Uniprot ID   -
Organism   Listeria innocua strain 2015L-6714     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 915124..926815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ19_RS05050 (MXK34_05055) - 915274..916155 (+) 882 WP_247413091.1 polyprenyl synthetase family protein -
  QMZ19_RS05055 (MXK34_05060) - 916354..916554 (+) 201 WP_003719639.1 cold-shock protein -
  QMZ19_RS05060 (MXK34_05065) dxs 916720..918640 (+) 1921 Protein_929 1-deoxy-D-xylulose-5-phosphate synthase -
  QMZ19_RS05065 (MXK34_05070) - 918637..919461 (+) 825 WP_160465670.1 TlyA family RNA methyltransferase -
  QMZ19_RS05070 (MXK34_05075) argR 919652..920101 (+) 450 WP_003766793.1 transcriptional regulator ArgR -
  QMZ19_RS05075 (MXK34_05080) recN 920124..921815 (+) 1692 WP_185344228.1 DNA repair protein RecN Machinery gene
  QMZ19_RS05080 (MXK34_05085) - 921944..922810 (+) 867 WP_247413093.1 phosphate acyltransferase -
  QMZ19_RS05085 (MXK34_05090) buk 922947..924014 (+) 1068 WP_247413095.1 butyrate kinase -
  QMZ19_RS05090 (MXK34_05095) lpdA 924028..925455 (+) 1428 WP_247413096.1 dihydrolipoyl dehydrogenase -
  QMZ19_RS05095 (MXK34_05100) - 925480..926475 (+) 996 WP_247413097.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63552.32 Da        Isoelectric Point: 5.2644

>NTDB_id=677541 QMZ19_RS05075 WP_185344228.1 920124..921815(+) (recN) [Listeria innocua strain 2015L-6714]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSTDFIRHGEERLELQGLFALAEDNLACRNA
LLENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPAL
TKYQTNFKEYQTILREWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNVLANFEKLNENLQGAYTAIQG
EPGGLEFIGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEKEISTEMEKLTDSESHVGHLETKMATLKTELTKQASTLTDIRKKAAATLEKQIKQELNQLYMEKAIFSVHFE
SDKTELTESGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTILKGEQKVEEISRMIAGIEVTELTKQHAKEMIQQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=677541 QMZ19_RS05075 WP_185344228.1 920124..921815(+) (recN) [Listeria innocua strain 2015L-6714]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCACTCTCTTTAACTTTTCAAGAAGGGATGACGGTATT
AACTGGGGAGACCGGCGCAGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGGGGATCGACTGATT
TTATTCGCCACGGCGAGGAACGTTTGGAACTGCAAGGATTATTTGCCTTAGCAGAAGATAATCTTGCCTGCCGAAATGCG
CTTTTGGAAAATGGAATAGATGCTTCGGATGATATGGTTGTTTTGGAACGTAGCTTATTTCGCTCCGGTAAAAATAGTTG
CCGCATTAACGGAAAACTAGTAACTACGGTATTGCTACGCCAAATCGGCTCTAAATTAATAGATATTCATAGTCAACATG
AGCACCAAGAATTAATGAATGAAGAATTTCATTTATCGTTACTAGATAGGTTTGCTGCGGATAAAATTAAACCTGCTTTA
ACGAAATATCAAACTAATTTTAAAGAGTACCAAACTATTTTGAGAGAATGGCAAAATTGGACGAAAAATGAACGAGAACT
TGCACAGCGGCTCGATATGCTTCGTTTTCAACAACAAGAAATTGAAAATGCTAATTTGCAAGCTGGGGAAGAAGATCGTT
TATTAGAACAAAAAAATGTTTTAGCCAATTTTGAAAAGTTAAATGAAAACTTGCAAGGAGCGTATACGGCTATCCAAGGA
GAACCGGGCGGACTTGAATTTATTGGAGAAGCAATGCGTCAGATGGAAGCAGCTGCGAGTATTCATACGGATTATAAAGC
AGTTAGTGAGGCAATATCATCCAGTTACTATATGCTTGAAGATAGTATGAGCCAAATTAGACAATCGCTTGATCAGCTTG
AATTCCAACCGGAAGAACTGAATCAAATTGAATCACGCTTGAATGATTTAAATCAACTGAAACGTAAATACGGTAAAACC
ATTGAAGATATTATTCAGTATGAAAAAGAAATTAGTACTGAAATGGAAAAACTGACAGATAGCGAGTCCCACGTTGGGCA
TTTAGAAACTAAAATGGCCACATTAAAAACAGAACTCACAAAACAAGCAAGTACCCTTACTGACATCCGTAAAAAAGCAG
CAGCCACGTTAGAAAAACAAATAAAACAAGAATTAAATCAATTATATATGGAAAAAGCTATTTTCAGCGTTCACTTTGAG
TCTGACAAAACAGAACTAACAGAATCTGGCCAAGACAGTGTCGTCTTCTATATGTCGACCAATCCAGGTGAACCGCTAAA
ACCACTTGCGAAAATCGCTTCTGGCGGTGAGTTATCACGAATGATGTTAGCGCTAAAAACTATTTTTTCAAGACATCAAG
GTATTACATCTATCATTTTTGATGAAGTGGATACGGGTGTAAGTGGACGTGTCGGCCAAGCGATTGCAGAAAAAATTTAT
GCAGTCTCTGTTGGTTCACAAGTTCTTTGTATCAGTCATTTGCCTCAAGTAGCTGCAATGGCTAACCACCATTACTACAT
CACAAAAAAAGTACAAAATAAACGGACAACTACTTCCGTCACAATTTTAAAAGGCGAGCAAAAAGTAGAAGAAATTAGCC
GTATGATTGCTGGGATAGAAGTGACCGAACTAACAAAACAACACGCGAAAGAAATGATTCAACAAGCGGAAAAAGTAAAA
CAAACCTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.91

100

0.531