Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG574_RS27025 Genome accession   NZ_CP109485
Coordinates   5911506..5912510 (+) Length   334 a.a.
NCBI ID   WP_100596094.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01445     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5906506..5917510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG574_RS27000 (OG574_26990) - 5907036..5907707 (+) 672 WP_326775311.1 TetR/AcrR family transcriptional regulator -
  OG574_RS27005 (OG574_26995) - 5907861..5909345 (+) 1485 WP_326778631.1 MFS transporter -
  OG574_RS27010 (OG574_27000) - 5909377..5909889 (-) 513 WP_326775312.1 MarR family transcriptional regulator -
  OG574_RS27015 (OG574_27005) - 5910003..5910764 (+) 762 WP_326778632.1 class III extradiol ring-cleavage dioxygenase -
  OG574_RS27020 (OG574_27010) - 5910776..5911285 (-) 510 WP_326778633.1 GNAT family N-acetyltransferase -
  OG574_RS27025 (OG574_27015) rpoS 5911506..5912510 (+) 1005 WP_100596094.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG574_RS27030 (OG574_27020) - 5912552..5913547 (-) 996 WP_326775313.1 WYL domain-containing protein -
  OG574_RS27035 (OG574_27025) - 5913701..5915203 (+) 1503 WP_326775314.1 MFS transporter -
  OG574_RS27040 (OG574_27030) - 5915268..5916527 (-) 1260 WP_326775315.1 extracellular solute-binding protein -
  OG574_RS27045 (OG574_27035) - 5916600..5917343 (+) 744 WP_326775316.1 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37217.06 Da        Isoelectric Point: 5.1535

>NTDB_id=677496 OG574_RS27025 WP_100596094.1 5911506..5912510(+) (rpoS) [Streptomyces sp. NBC_01445]
MATRAVARRKSAASGETDGARSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYARQILDGEAESEAA
GKASREELEALVAAGERAKDVFIKSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQ
AITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGRDPEPEEIAAELDSKPARVVDVLDWARDPVSLNMPVDDEGDT
QFGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLE
LKKLARDTGFDAAA

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=677496 OG574_RS27025 WP_100596094.1 5911506..5912510(+) (rpoS) [Streptomyces sp. NBC_01445]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCGCCTCCGGCGAGACCGACGGCGCACGCAGTGTTCGCGCCGTAGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCGCTGCTGGACGCCGCCAAGG
AAGTCGAACTTTCCCAGACCATCGAGGCGGGCGTGTACGCCCGGCAGATCCTCGACGGCGAGGCGGAGAGCGAAGCCGCG
GGCAAGGCGTCCCGCGAGGAGCTCGAAGCGCTCGTCGCCGCGGGTGAGCGGGCCAAGGACGTCTTCATCAAGTCCAATCT
GCGCCTGGTCGTGGCCGTCGCGCGCCGCTACCCGAGGAGCGGTCTCCCGCTCCTCGACCTCATCCAGGAGGGGAACGCGG
GCCTGGTGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCGACGTGGTGGATCCGGCAG
GCCATCACGCGCTCGATAGCCGACCAGTCGCGCACGATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTGGGCCGCATCCG
GCGCGTGCAGCGCGAGTTCAACCGGAAGAACGGGCGGGACCCCGAGCCCGAGGAGATCGCCGCCGAGCTCGACTCCAAGC
CCGCTCGCGTCGTCGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGCCGGTGGACGACGAGGGCGATACC
CAGTTCGGTGACCTTCTGGAGGACACGTCCGCGGTGTCGCCCGAGCAGTCCGTCCTCACGCTGCTGCGCAGCGAGGAGCT
GGACGACCTCATCGGCCGCCTCGACCAGCGCACGGCGTCCATCATCAAGATGCGGTACGGGATCGACGACGGCCGTGAGC
GCACGCTCACGGAGGTCGGCAAGGAGCACGGGCTGACGCGCGAGCGGATCCGGCAGATCGAGAAGCACGCGCTTCTTGAG
CTGAAGAAGCTGGCTCGGGACACCGGGTTCGATGCCGCCGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(102-171)

Sigma-70, region 4 (Sigma70_r4)

(271-323)

Sigma-70 region 3 (Sigma70_r3)

(181-257)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.532

90.12

0.365