Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG574_RS24320 Genome accession   NZ_CP109485
Coordinates   5331152..5332276 (-) Length   374 a.a.
NCBI ID   WP_326774940.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01445     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5326152..5337276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG574_RS24310 (OG574_24300) gyrB 5328242..5330338 (-) 2097 WP_326774938.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OG574_RS24315 (OG574_24305) - 5330613..5331155 (-) 543 WP_326774939.1 DciA family protein -
  OG574_RS24320 (OG574_24310) recF 5331152..5332276 (-) 1125 WP_326774940.1 DNA replication/repair protein RecF Machinery gene
  OG574_RS24325 (OG574_24315) gnd 5332378..5333253 (-) 876 WP_100597233.1 decarboxylating 6-phosphogluconate dehydrogenase -
  OG574_RS24330 (OG574_24320) dnaN 5333431..5334561 (-) 1131 WP_116512073.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40942.62 Da        Isoelectric Point: 6.7125

>NTDB_id=677491 OG574_RS24320 WP_326774940.1 5331152..5332276(-) (recF) [Streptomyces sp. NBC_01445]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVRQGERQ
QLIELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQ
RNTLLKSAALARRHGGRSMDLSTLDVWDQHLARVGAELLAQRFDLIATLQPLADKAYEQLAPGGGPLALDYKPSSPEIDG
HAREELYEQLMAALEAARKQEIERGVTLVGPHRDDLILKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVL
DDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLAGTRYAVSEGTVERV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=677491 OG574_RS24320 WP_326774940.1 5331152..5332276(-) (recF) [Streptomyces sp. NBC_01445]
ATGCACGTGACGCATCTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAAGTCCCTCTCGATCCGGGCGTCACCGC
GTTCGTGGGTCCGAACGGGCAGGGCAAGACCAACCTCGTCGAGGCGGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCGCCGCTGGTCCGCATGGGCGCCGAGCGCGCCGTCATCCGGGCCGCGGTCCGGCAGGGCGAGCGCCAG
CAGCTCATCGAGCTCGAGCTCAACCCGGGCAAGGCGAACCGCGCCAGGATCAACCGATCCTCGCAGGTCAGACCTCGTGA
CGTGCTGGGCATCGTGCGCACGGTCCTGTTCGCGCCGGAGGACCTCGCGCTCGTCAAGGGCGACCCCGGCGAGCGCCGCC
GCTTCCTCGACGAACTGATCACCGCCCGCTCCCCGCGCATGGCCGGCGTGCGGTCCGACTACGACCGCGTACTCAAGCAG
CGCAACACGCTCCTCAAGTCGGCCGCGCTCGCCCGCAGGCACGGCGGCCGGTCAATGGACCTGTCGACCCTCGACGTGTG
GGACCAGCACCTCGCGCGCGTGGGCGCCGAGCTGCTCGCGCAGCGGTTCGACCTGATCGCCACGCTCCAGCCGCTCGCCG
ACAAGGCGTACGAGCAGTTGGCGCCCGGCGGCGGCCCGCTCGCCCTCGACTACAAGCCGTCCTCGCCCGAAATCGACGGC
CACGCGCGCGAAGAGCTCTACGAGCAGCTGATGGCCGCCCTCGAAGCGGCCCGCAAACAGGAGATCGAGCGGGGCGTCAC
CCTCGTCGGACCGCACCGCGACGACCTGATACTCAAGCTCGGCCAGCTGCCTGCGAAGGGGTACGCCAGCCACGGCGAGT
CCTGGTCGTACGCGCTGGCTCTGCGCCTGGCCTCGTACGACCTGCTGCGGGCCGAGGGGAACGAGCCGGTGCTCGTGCTC
GACGACGTCTTCGCGGAGCTCGACGCGCGGCGCAGGGAGCGTCTCGCCGAGCTGGTCGCCCCCGGCGAGCAGGTCCTGGT
GACGGCCGCGGTGGACGACGATGTGCCGGGCGTCCTGGCGGGCACGCGGTACGCGGTGTCCGAAGGAACGGTGGAGCGGG
TATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.921

95.187

0.361