Detailed information NTG0067749

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JLE49_RS05125
• Genome accession: NZ_AP022409
• Coordinates: 1075404..1076396 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain STW0522-31
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1070404..1081396

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JLE49_RS05095 (STW0522ESC31_09960)	ispD	1070465..1071175 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JLE49_RS05100 (STW0522ESC31_09970)	ispF	1071175..1071654 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JLE49_RS05105 (STW0522ESC31_09980)	truD	1071651..1072700 (+)	1050	WP_000568926.1	tRNA pseudouridine(13) synthase TruD	-
JLE49_RS05110 (STW0522ESC31_09990)	surE	1072681..1073442 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JLE49_RS05115 (STW0522ESC31_10000)	pcm	1073436..1074062 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JLE49_RS05120 (STW0522ESC31_10010)	nlpD	1074247..1075341 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
JLE49_RS05125 (STW0522ESC31_10020)	rpoS	1075404..1076396 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JLE49_RS05130 (STW0522ESC31_10030)	ygbN	1076490..1077854 (-)	1365	WP_001402448.1	GntP family transporter	-
JLE49_RS05135 (STW0522ESC31_10040)	ygbM	1077943..1078719 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
JLE49_RS05140 (STW0522ESC31_10050)	ygbL	1078724..1079362 (-)	639	WP_001278994.1	aldolase	-
JLE49_RS05145 (STW0522ESC31_10060)	otnK	1079359..1080621 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=67749 JLE49_RS05125 WP_000081550.1 1075404..1076396(+) (rpoS) [Escherichia coli strain STW0522-31]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=67749 JLE49_RS05125 WP_000081550.1 1075404..1076396(+) (rpoS) [Escherichia coli strain STW0522-31]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715