NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	MXB02_RS03675	Genome accession	NZ_CP095556
Coordinates	820451..821818 (+)	Length	455 a.a.
NCBI ID	WP_028691337.1	Uniprot ID	A0A923GBB3
Organism	Pseudomonas mosselii strain 923
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 815451..826818

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MXB02_RS03645 (MXB02_03645)	cydB	815620..816627 (+)	1008	WP_247283976.1	cytochrome d ubiquinol oxidase subunit II	-
MXB02_RS03650 (MXB02_03650)	-	816640..816780 (+)	141	WP_023630574.1	DUF2474 domain-containing protein	-
MXB02_RS03655 (MXB02_03655)	-	816872..817996 (-)	1125	WP_247283977.1	methyltransferase	-
MXB02_RS03660 (MXB02_03660)	-	818095..818799 (-)	705	WP_028691335.1	autoinducer binding domain-containing protein	-
MXB02_RS03665 (MXB02_03665)	-	819015..819791 (+)	777	WP_069017054.1	ferredoxin--NADP reductase	-
MXB02_RS03670 (MXB02_03670)	mscL	819860..820273 (-)	414	WP_011535791.1	large-conductance mechanosensitive channel protein MscL	-
MXB02_RS03675 (MXB02_03675)	radA	820451..821818 (+)	1368	WP_028691337.1	DNA repair protein RadA	Machinery gene
MXB02_RS03680 (MXB02_03680)	-	821891..822394 (+)	504	WP_062362118.1	RNA polymerase sigma factor	-
MXB02_RS03685 (MXB02_03685)	-	822463..823452 (+)	990	WP_028691339.1	FecR domain-containing protein	-
MXB02_RS03690 (MXB02_03690)	-	823658..826327 (+)	2670	WP_247284582.1	TonB-dependent receptor	-

Sequence

Protein

Download Length: 455 a.a. Molecular weight: 48742.12 Da Isoelectric Point: 6.8984

                                >NTDB_id=677471 MXB02_RS03675 WP_028691337.1 820451..821818(+) (radA) [Pseudomonas mosselii strain 923]

MAKAKRLYGCTECGATFPKWAGQCGDCGAWNTLVETMIESGGAAAPSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL

DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATQMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA

TARQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE

GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA

NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG

EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide

Download Length: 1368 bp

                                >NTDB_id=677471 MXB02_RS03675 WP_028691337.1 820451..821818(+) (radA) [Pseudomonas mosselii strain 923]

ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACAGAGTGCGGCGCGACCTTCCCCAAATGGGCCGGCCAGTGCGGTGACTG

CGGTGCCTGGAACACCCTGGTCGAGACCATGATCGAAAGCGGTGGCGCCGCGGCGCCGAGCGGGCGGGCCGGCTGGACCG

GGCAGCAGGCACAGATCAAGACCCTGGCCGAAGTCAGTGTCGAGGAGATTCCGCGCTTCACCACCAGCAGCACCGAACTC

GACCGCGTGCTCGGCGGTGGCCTGGTGGACGGCTCGGTGGTGTTGATCGGCGGTGATCCGGGGATCGGCAAGTCCACCAT

CCTCCTGCAGACCCTGTGCAACATCGCCACGCAGATGCCGGCGCTGTATGTCACCGGCGAGGAGTCGCAGCAGCAAGTGG

CCATGCGCTCCCGGCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTCATGACCGAAACCTGCATCGAGACCATCATCGCC

ACCGCGCGCCAGGAAAAGCCGCGGGTGATGGTCATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAGTCGGCCCC

GGGCGGCGTCGCCCAGGTGCGCGAGAGTACGGCGTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG

TCGGCCACGTCACCAAGGAAGGCTCGCTGGCCGGGCCCCGGGTGCTTGAGCACATGGTTGATACCGTGCTGTATTTCGAG

GGGGAGTCCGATGGTCGCCTGCGCCTGCTGCGGGCAGTGAAGAACCGCTTCGGCGCGGTTAACGAACTGGGCGTGTTCGG

CATGACCGACCGCGGCCTCAAGGAAGTCTCCAACCCCTCGGCGATCTTCCTCAACCGCACCCAGGAAGAAGTACCCGGCA

GCGTGGTCATGGCCACCTGGGAGGGGACCCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACGACAGTCACCTGGCC

AACCCGCGCCGGGTGACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGGCACGGCGGCAT

CCCCACCCATGACCAGGATGTATTCCTCAACGTCGTCGGTGGTGTGAAAGTGCTGGAAACCGCCTCCGACCTGGCGTTGC

TGGCCGCGGTGATGTCGAGCTTGCGCAACCGTCCGCTGGCCCATGGCTTGCTGGTATTCGGCGAGATCGGCCTGTCGGGC

GAGGTGCGGCCGGTGCCCAGTGGCCAGGAGCGCCTGAAGGAGGCGGCCAAGCATGGCTTCAAGCGCGCCATCGTGCCCAA

GGGCAACGCGCCAAAGGAGGCACCCGCCGGTTTGCAGGTGATTGCCGTGACCCGTCTGGAACAGGCGCTGGATGCACTCT

TCGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.684	100	0.488
radA	Streptococcus mitis SK321	46.288	100	0.466
radA	Streptococcus pneumoniae D39	46.187	100	0.466
radA	Streptococcus pneumoniae TIGR4	46.187	100	0.466
radA	Streptococcus pneumoniae R6	46.187	100	0.466
radA	Streptococcus pneumoniae Rx1	46.187	100	0.466
radA	Streptococcus mitis NCTC 12261	45.969	100	0.464

Detailed information NTG0677471