Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG568_RS29530 Genome accession   NZ_CP109480
Coordinates   6600640..6601641 (+) Length   333 a.a.
NCBI ID   WP_054233096.1    Uniprot ID   A0ABU3URY2
Organism   Streptomyces sp. NBC_01450     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 6595640..6606641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG568_RS29505 (OG568_29550) - 6595878..6596522 (+) 645 WP_266433722.1 TetR/AcrR family transcriptional regulator -
  OG568_RS29510 (OG568_29555) - 6596710..6598260 (+) 1551 WP_266583046.1 MFS transporter -
  OG568_RS29515 (OG568_29560) - 6598414..6598923 (-) 510 WP_266583044.1 MarR family transcriptional regulator -
  OG568_RS29520 (OG568_29565) - 6599102..6599863 (+) 762 WP_329536487.1 class III extradiol ring-cleavage dioxygenase -
  OG568_RS29525 (OG568_29570) - 6599931..6600470 (-) 540 WP_329533740.1 N-acetyltransferase family protein -
  OG568_RS29530 (OG568_29575) rpoS 6600640..6601641 (+) 1002 WP_054233096.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG568_RS29535 (OG568_29580) - 6602208..6602807 (+) 600 WP_329536488.1 TetR family transcriptional regulator -
  OG568_RS29540 (OG568_29585) - 6602890..6603921 (-) 1032 WP_329533741.1 YafY family protein -
  OG568_RS29545 (OG568_29590) - 6603984..6605561 (+) 1578 WP_329533742.1 MFS transporter -
  OG568_RS29550 (OG568_29595) - 6605765..6606172 (+) 408 WP_329536432.1 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37387.14 Da        Isoelectric Point: 4.9035

>NTDB_id=677411 OG568_RS29530 WP_054233096.1 6600640..6601641(+) (rpoS) [Streptomyces sp. NBC_01450]
MATRAVARRQSATGETTDAARSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQILDDEVDAPKA
DATREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLEL
KKLARDTGFDAAA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=677411 OG568_RS29530 WP_054233096.1 6600640..6601641(+) (rpoS) [Streptomyces sp. NBC_01450]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGTCCGCCACCGGCGAGACCACCGACGCGGCACGCAGTGTTCGCGCCGTAGG
CGGCGAAATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTTTCCCAGATCATCGAGGCGGGTGTGTTCGCGCGGCAGATCCTCGACGACGAGGTGGATGCCCCCAAGGCG
GACGCGACCCGCGAGGAGCTCGAGGCGCTGGTCGCCGAGGGGGAGCGGGCCAAGGACGTCTTCATCCGCTCCAACCTGCG
GCTGGTCGTCGCCGTGGCCCGGCGATATCCCCGTAGCGGCCTCCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGCC
TGGTGCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCCACGTGGTGGATCCGTCAGGCC
ATCACCCGCTCCATCGCCGACCAGTCGCGCACGATCCGCCTTCCCGTGCACCTGGTCGAGGAGCTGGGCCGCATCCGCCG
GGTGCAGCGCGAGTTCAACCGCAAGAACGGGCGGGAGCCCGAGCACGCGGAGATCGCCGCCGAGCTGGACTCGACCCCGG
AGCGTGTGACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGTGACACCCAG
TTCGGTGACCTCCTCGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCCTCACCCTGCTGCGCAGCGAGGAGCTCGA
CGACCTGATCGGCCGCCTCGACCAGCGCACGGCCTCGATCATCAAGATGCGGTACGGCATCGACGACGGCCGGGAGCGCA
CGCTCACGGAGGTCGGCAAGGAGCACGGGCTCACCCGTGAGCGCATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTG
AAGAAGCTGGCCCGCGACACCGGTTTTGACGCGGCGGCTTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(270-322)

Sigma-70 region 3 (Sigma70_r3)

(180-256)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(101-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.333

90.09

0.363