Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MW400_RS09970 Genome accession   NZ_CP095533
Coordinates   2177839..2178468 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GN02461     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2172839..2183468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW400_RS09950 (MW400_09950) ycbZ 2173229..2174989 (-) 1761 WP_000156476.1 AAA family ATPase -
  MW400_RS09955 (MW400_09955) matP 2175175..2175627 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MW400_RS09960 (MW400_09960) ompA 2175702..2176754 (-) 1053 WP_000750418.1 porin OmpA -
  MW400_RS09965 (MW400_09965) sulA 2177111..2177620 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MW400_RS09970 (MW400_09970) sxy/tfoX 2177839..2178468 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MW400_RS09975 (MW400_09975) yccS 2178431..2180593 (-) 2163 WP_000875041.1 YccS family putative transporter -
  MW400_RS09980 (MW400_09980) yccF 2180603..2181049 (-) 447 WP_001261235.1 YccF domain-containing protein -
  MW400_RS09985 (MW400_09985) helD 2181172..2183226 (+) 2055 WP_001445749.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=677399 MW400_RS09970 WP_000839153.1 2177839..2178468(+) (sxy/tfoX) [Escherichia coli strain GN02461]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=677399 MW400_RS09970 WP_000839153.1 2177839..2178468(+) (sxy/tfoX) [Escherichia coli strain GN02461]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1