Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG568_RS15840 Genome accession   NZ_CP109480
Coordinates   3546485..3547261 (+) Length   258 a.a.
NCBI ID   WP_266430282.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01450     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3541485..3552261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG568_RS15825 (OG568_15860) - 3541684..3542217 (+) 534 WP_266430275.1 TerD family protein -
  OG568_RS15830 (OG568_15865) - 3542324..3545230 (-) 2907 WP_329532045.1 vitamin B12-dependent ribonucleotide reductase -
  OG568_RS15835 (OG568_15870) nrdR 3545383..3545967 (-) 585 WP_266430280.1 transcriptional regulator NrdR -
  OG568_RS15840 (OG568_15875) dinR/lexA 3546485..3547261 (+) 777 WP_266430282.1 transcriptional repressor LexA Regulator
  OG568_RS15845 (OG568_15880) - 3547900..3549903 (-) 2004 WP_329532046.1 ATP-dependent DNA helicase -
  OG568_RS15850 (OG568_15885) - 3550010..3552031 (-) 2022 WP_329532047.1 IucA/IucC family siderophore biosynthesis protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27911.64 Da        Isoelectric Point: 7.4237

>NTDB_id=677375 OG568_RS15840 WP_266430282.1 3546485..3547261(+) (dinR/lexA) [Streptomyces sp. NBC_01450]
MTTTADSATITAQDRSQGRLEPVHAMNEATNIEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=677375 OG568_RS15840 WP_266430282.1 3546485..3547261(+) (dinR/lexA) [Streptomyces sp. NBC_01450]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAATATTGAGGGGCCCAAGCGCTCCCTGCCAGGGCGACCTCCAGGCATCCGCGCCGACAGCTCGGGACTAA
CCGACAGGCAACGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGACAGGCTGTCGGCCTCTCCAGCACCTCCTCTGTCGCCCATCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGACCGCGGGCGTACGAGGTCCGGGGCTCCGACCAGTCCTCGGCACAGCCCACGGACACGGCGGGCAAGC
CGGCCGCGTCGTACGTCCCGCTCGTCGGCCGTATCGCCGCCGGTGGCCCGATCCTGGCCGAGGAGTCGGTGGAGGACGTC
TTCCCCCTCCCCCGGCAGCTGGTCGGCGACGGCGAGCTGTTCGTCCTCAAGGTCGTCGGTGACTCGATGATCGAGGCCGC
CATCTGCGACGGGGACTGGGTGACGGTCCGCCGTCAGCCGGTCGCGGAGAACGGCGACATCGTGGCCGCCATGCTCGACG
GCGAGGCCACGGTGAAGCGGTTCAAGCGCGAGGACGGCCACGTATGGCTCCTCCCGCACAACGCCGCCTACCAGCCGATT
CCCGGCGACGAGGCGACCATCCTGGGCAAGGTGGTGGCGGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372