Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MW397_RS08850 Genome accession   NZ_CP095529
Coordinates   1889699..1890328 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GN06156     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1884699..1895328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW397_RS08830 (MW397_08830) ycbZ 1885101..1886861 (-) 1761 WP_000156482.1 AAA family ATPase -
  MW397_RS08835 (MW397_08835) matP 1887047..1887499 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MW397_RS08840 (MW397_08840) ompA 1887575..1888615 (-) 1041 WP_001309394.1 porin OmpA -
  MW397_RS08845 (MW397_08845) sulA 1888971..1889480 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MW397_RS08850 (MW397_08850) sxy/tfoX 1889699..1890328 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MW397_RS08855 (MW397_08855) yccS 1890291..1892453 (-) 2163 WP_000875041.1 YccS family putative transporter -
  MW397_RS08860 (MW397_08860) yccF 1892463..1892909 (-) 447 WP_001261235.1 YccF domain-containing protein -
  MW397_RS08865 (MW397_08865) helD 1893032..1895086 (+) 2055 WP_029305410.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=677374 MW397_RS08850 WP_000839153.1 1889699..1890328(+) (sxy/tfoX) [Escherichia coli strain GN06156]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=677374 MW397_RS08850 WP_000839153.1 1889699..1890328(+) (sxy/tfoX) [Escherichia coli strain GN06156]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1