Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MW395_RS11620 Genome accession   NZ_CP095526
Coordinates   2170562..2171191 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GN05505     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2165562..2176191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW395_RS11605 (MW395_11600) helD 2165804..2167858 (-) 2055 WP_001305911.1 DNA helicase IV -
  MW395_RS11610 (MW395_11605) yccF 2167981..2168427 (+) 447 WP_001261235.1 YccF domain-containing protein -
  MW395_RS11615 (MW395_11610) yccS 2168437..2170599 (+) 2163 WP_000875041.1 YccS family putative transporter -
  MW395_RS11620 (MW395_11615) sxy/tfoX 2170562..2171191 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MW395_RS11625 (MW395_11620) sulA 2171410..2171919 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MW395_RS11630 (MW395_11625) ompA 2172275..2173315 (+) 1041 WP_001309394.1 porin OmpA -
  MW395_RS11635 (MW395_11630) matP 2173391..2173843 (-) 453 WP_001550034.1 macrodomain Ter protein MatP -
  MW395_RS11640 (MW395_11635) ycbZ 2174029..2175789 (+) 1761 WP_000156482.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=677355 MW395_RS11620 WP_000839153.1 2170562..2171191(-) (sxy/tfoX) [Escherichia coli strain GN05505]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=677355 MW395_RS11620 WP_000839153.1 2170562..2171191(-) (sxy/tfoX) [Escherichia coli strain GN05505]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1