Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG568_RS01340 Genome accession   NZ_CP109480
Coordinates   285691..286362 (-) Length   223 a.a.
NCBI ID   WP_329529899.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01450     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 280691..291362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG568_RS01320 (OG568_01330) - 281496..281696 (-) 201 WP_329529895.1 hypothetical protein -
  OG568_RS01325 (OG568_01335) - 281881..283278 (-) 1398 WP_329529896.1 HupE/UreJ family protein -
  OG568_RS01330 (OG568_01340) - 283275..284354 (-) 1080 WP_329529897.1 DUF3500 domain-containing protein -
  OG568_RS01335 (OG568_01345) - 285205..285687 (+) 483 WP_329529898.1 hypothetical protein -
  OG568_RS01340 (OG568_01350) dinR/lexA 285691..286362 (-) 672 WP_329529899.1 transcriptional repressor LexA Regulator
  OG568_RS01345 (OG568_01355) - 286751..287245 (-) 495 WP_329529900.1 MarR family transcriptional regulator -
  OG568_RS01350 (OG568_01360) - 287367..288824 (+) 1458 WP_329529901.1 MFS transporter -
  OG568_RS01355 (OG568_01365) - 288890..289312 (+) 423 WP_329529902.1 hypothetical protein -
  OG568_RS01360 (OG568_01370) - 289488..290318 (+) 831 WP_329529903.1 M55 family metallopeptidase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24449.86 Da        Isoelectric Point: 5.1285

>NTDB_id=677351 OG568_RS01340 WP_329529899.1 285691..286362(-) (dinR/lexA) [Streptomyces sp. NBC_01450]
MDNDMPVRRGRPTGPRSVEGELTTRQGDIVRFITDTVQRQGYPPSMREIGQAVQLASTSSVAYQLMALERKGVLYRDPHR
PRAYRVRPSWAPDLGRNSEAPVDVPLVGRIAAGAPLLAEEMVEDVYSLPRQVVGDGDLFALTVSGDSMIDAAICDGDIVT
VRRQDSADHGDIVAALLEDEATVKVLRRQDGRVWLMPRNPAYEPIPGDQAQILGKVVGVLRVL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=677351 OG568_RS01340 WP_329529899.1 285691..286362(-) (dinR/lexA) [Streptomyces sp. NBC_01450]
ATGGACAACGACATGCCTGTACGCCGTGGTCGGCCGACGGGCCCCCGCAGCGTCGAAGGGGAACTGACAACACGCCAAGG
GGACATTGTCCGGTTCATCACCGACACGGTTCAGCGCCAGGGCTACCCGCCGTCGATGCGGGAGATCGGCCAGGCCGTGC
AACTCGCCAGCACGTCCTCGGTCGCCTACCAACTGATGGCCCTGGAACGCAAGGGCGTCCTCTACCGCGACCCGCACCGT
CCGCGCGCCTACCGGGTACGGCCTTCCTGGGCACCCGACCTGGGCCGCAACAGCGAGGCACCGGTCGACGTGCCGCTCGT
CGGGCGGATCGCCGCCGGCGCGCCGTTGCTCGCGGAGGAGATGGTCGAGGACGTCTACTCCCTGCCCCGCCAGGTCGTGG
GCGACGGCGACCTGTTCGCCCTGACAGTCTCCGGCGACAGCATGATCGACGCCGCGATCTGCGACGGTGACATTGTGACC
GTCAGGCGGCAGGACAGCGCCGATCACGGCGACATCGTCGCCGCGCTCCTGGAGGACGAGGCCACCGTCAAGGTGCTGCG
TCGGCAGGACGGGCGGGTGTGGCTCATGCCCCGCAATCCGGCCTACGAGCCGATCCCCGGCGACCAGGCGCAGATCCTCG
GCAAGGTCGTCGGCGTCCTGCGCGTGCTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(105-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.933

93.722

0.43