Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG595_RS41000 Genome accession   NZ_CP109479
Coordinates   9274390..9275370 (+) Length   326 a.a.
NCBI ID   WP_329281266.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01451     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 9269390..9280370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG595_RS40985 (OG595_40975) - 9269627..9270358 (-) 732 WP_329281260.1 DUF6250 domain-containing protein -
  OG595_RS40990 (OG595_40980) - 9270614..9272260 (+) 1647 WP_329281262.1 rhamnogalacturonan lyase B N-terminal domain-containing protein -
  OG595_RS40995 (OG595_40985) - 9272533..9273879 (-) 1347 WP_329281264.1 jacalin-like lectin -
  OG595_RS41000 (OG595_40990) cytR 9274390..9275370 (+) 981 WP_329281266.1 LacI family DNA-binding transcriptional regulator Regulator
  OG595_RS41005 (OG595_40995) - 9275429..9277189 (-) 1761 WP_329281268.1 cellulase family glycosylhydrolase -
  OG595_RS41010 (OG595_41000) - 9277314..9278822 (-) 1509 WP_329281271.1 glycoside hydrolase family 43 protein -
  OG595_RS41015 (OG595_41005) - 9278873..9279253 (-) 381 WP_329281273.1 hypothetical protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35177.32 Da        Isoelectric Point: 5.7435

>NTDB_id=677346 OG595_RS41000 WP_329281266.1 9274390..9275370(+) (cytR) [Streptomyces sp. NBC_01451]
MVTIAYIAESAGVSVPTVSKVLNGRSGVSDETRARVEELIHRYGYRKPPKNRSNLVELVFRELESMWAVEIIRGVERVAR
KNKIGLLVSEFGLQGAPGRSIDDTLERRPQCVLSVAQLSEEERAQLKAKGIPFVVFDPNGELPDDVPFVGATNWRGGQAA
TRHLVGLGHRRIAMISGPDHPFCLARLAGYTSALTEAGLAMDPDLVVKTLLTREDGYAAARGLLSRPEPPTAVFTANDMQ
AMGVYQAARELGLRIPQDLSVVGFDDVPAVAWVDPPLTTVHQPLAEMAVAATEMALALGRGEDVPQVGLEIATTLTVRES
TAPPKS

Nucleotide


Download         Length: 981 bp        

>NTDB_id=677346 OG595_RS41000 WP_329281266.1 9274390..9275370(+) (cytR) [Streptomyces sp. NBC_01451]
GTGGTCACCATCGCCTACATCGCCGAGTCCGCCGGTGTCTCGGTGCCCACCGTGTCGAAGGTGCTCAACGGCCGGTCCGG
GGTGTCGGACGAGACACGGGCCCGCGTCGAGGAGCTGATCCACCGGTACGGCTACCGCAAGCCGCCGAAGAACCGCAGCA
ATCTCGTGGAGCTGGTCTTCCGCGAGCTGGAGAGCATGTGGGCCGTGGAGATCATCCGCGGCGTGGAACGAGTCGCCCGG
AAGAACAAAATCGGTCTCCTGGTGTCGGAGTTCGGTCTCCAGGGCGCTCCGGGCAGGAGCATCGACGACACCCTGGAACG
GCGCCCGCAGTGCGTCCTGTCGGTGGCGCAGCTGTCGGAGGAGGAGCGGGCTCAGCTGAAGGCGAAGGGCATCCCGTTCG
TCGTCTTCGACCCGAACGGGGAGCTCCCCGACGACGTGCCGTTCGTGGGTGCCACCAACTGGCGGGGCGGCCAGGCCGCG
ACCCGGCACCTGGTCGGCCTGGGACACCGGCGCATCGCCATGATCAGCGGCCCCGATCATCCCTTCTGCCTCGCGCGGCT
GGCCGGCTACACCTCCGCACTCACGGAAGCCGGCCTGGCCATGGATCCGGATCTGGTCGTCAAAACTCTCCTCACCCGCG
AGGACGGCTACGCGGCGGCACGCGGCCTGCTCTCCCGGCCCGAGCCTCCCACCGCCGTCTTCACCGCCAACGACATGCAG
GCCATGGGTGTCTACCAGGCCGCGCGCGAGCTCGGGCTGAGGATCCCGCAGGACCTGAGTGTGGTGGGCTTCGACGACGT
ACCGGCCGTGGCCTGGGTGGATCCACCCCTGACCACGGTCCACCAGCCCCTGGCGGAGATGGCGGTGGCCGCCACCGAGA
TGGCGCTGGCACTGGGGCGCGGCGAGGACGTGCCCCAGGTGGGCCTGGAGATCGCCACCACCCTCACCGTCCGCGAGAGC
ACGGCACCGCCGAAGAGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-46)

Periplasmic binding protein-like domain (Peripla_BP_3)

(161-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.609

100

0.396
  cytR Vibrio parahaemolyticus RIMD 2210633

36.337

100

0.383