Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG595_RS13165 Genome accession   NZ_CP109479
Coordinates   3106167..3107198 (+) Length   343 a.a.
NCBI ID   WP_329271412.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01451     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3101167..3112198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG595_RS13150 (OG595_13130) - 3102847..3103758 (-) 912 WP_329271408.1 carbohydrate ABC transporter permease -
  OG595_RS13155 (OG595_13135) - 3103758..3104603 (-) 846 WP_329282850.1 sugar ABC transporter permease -
  OG595_RS13160 (OG595_13140) - 3104657..3105976 (-) 1320 WP_329271410.1 extracellular solute-binding protein -
  OG595_RS13165 (OG595_13145) cytR 3106167..3107198 (+) 1032 WP_329271412.1 LacI family DNA-binding transcriptional regulator Regulator
  OG595_RS13170 (OG595_13150) - 3107305..3109626 (+) 2322 WP_329271414.1 glycoside hydrolase family 3 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36038.80 Da        Isoelectric Point: 6.9232

>NTDB_id=677294 OG595_RS13165 WP_329271412.1 3106167..3107198(+) (cytR) [Streptomyces sp. NBC_01451]
MAKRAVTRSRTTLTGVAEAAGVSVATVSKVVNGRSDVSPETRARVEQLLVEHDYVARGPGGAQSPVRTIDLTFDALLNSN
NLVIARGVTEAAAEAGVDVVLGTAPDDPLGAAWTRRIANAGREGVILVTSELTSRQRAQFAQAGIPVVLIDPTNVPDESV
PSIGATNFAGGMTATEHLLKLGHRRIAMIEGRHDAVCNTARLHGYRAALTGAGITPDPRLIKQGDFRFEPAHRAALELFA
LDDPPTAVFTGNDLSAFGVIEAARRHGLRVPEDLSVVGFDDTAAASTSAPPLTTVRQPFVEIGRAALRTLLRLTAGEPLD
SHRVELATQLVVRSSTAPPPASS

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=677294 OG595_RS13165 WP_329271412.1 3106167..3107198(+) (cytR) [Streptomyces sp. NBC_01451]
ATGGCGAAGAGAGCCGTTACGCGGAGTCGGACCACCCTGACCGGTGTCGCCGAAGCGGCCGGGGTCTCTGTGGCCACCGT
GTCGAAGGTGGTCAACGGTCGCAGCGACGTCTCTCCCGAGACCCGGGCGCGCGTCGAGCAACTGCTGGTCGAGCACGACT
ACGTGGCCCGCGGCCCGGGTGGCGCGCAGTCGCCGGTGCGCACGATCGACCTGACCTTCGACGCGCTGCTCAACTCCAAC
AACCTGGTCATCGCGCGGGGTGTGACGGAGGCGGCGGCCGAGGCGGGCGTCGACGTCGTCCTCGGTACGGCGCCCGACGA
CCCGCTCGGTGCCGCCTGGACCCGGCGGATCGCCAACGCCGGGCGGGAGGGCGTCATCCTGGTGACGTCCGAGCTGACCT
CACGGCAGCGCGCCCAGTTCGCGCAGGCCGGCATCCCGGTGGTGCTGATCGACCCGACGAACGTGCCGGACGAGAGTGTG
CCGAGCATCGGTGCGACGAACTTCGCCGGTGGCATGACCGCGACCGAGCACCTGCTGAAGCTCGGCCACCGCAGGATCGC
GATGATCGAGGGACGGCACGACGCCGTCTGCAACACCGCACGCCTGCACGGCTACCGGGCCGCGCTCACCGGCGCCGGCA
TCACCCCCGACCCCCGGCTCATCAAGCAGGGCGACTTCCGCTTCGAACCCGCGCACCGGGCCGCCCTGGAACTCTTCGCC
CTCGACGACCCGCCCACCGCGGTCTTCACCGGCAACGACCTGTCGGCGTTCGGCGTCATCGAAGCCGCCCGCCGGCACGG
CCTGCGGGTGCCCGAGGACCTGAGTGTCGTCGGCTTCGACGACACCGCCGCGGCCAGCACCTCCGCCCCGCCGCTGACCA
CCGTCCGCCAGCCCTTCGTCGAGATCGGCCGCGCCGCGCTGCGCACCCTGCTCCGGCTCACGGCCGGAGAGCCACTGGAC
AGCCACCGGGTCGAGTTGGCCACCCAGCTCGTCGTCCGCTCGTCCACCGCCCCGCCGCCCGCCTCCTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(12-55)

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.725

97.376

0.367