Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG595_RS09710 Genome accession   NZ_CP109479
Coordinates   2299320..2300099 (+) Length   259 a.a.
NCBI ID   WP_329270060.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01451     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2294320..2305099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG595_RS09700 (OG595_09685) - 2295152..2298058 (-) 2907 WP_329270055.1 vitamin B12-dependent ribonucleotide reductase -
  OG595_RS09705 (OG595_09690) nrdR 2298226..2298777 (-) 552 WP_329270057.1 transcriptional regulator NrdR -
  OG595_RS09710 (OG595_09695) dinR/lexA 2299320..2300099 (+) 780 WP_329270060.1 transcriptional repressor LexA Regulator
  OG595_RS09715 (OG595_09700) - 2300246..2302276 (-) 2031 WP_329270062.1 ATP-dependent DNA helicase -
  OG595_RS09720 (OG595_09705) - 2302361..2303122 (-) 762 WP_329270064.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28010.73 Da        Isoelectric Point: 7.4237

>NTDB_id=677281 OG595_RS09710 WP_329270060.1 2299320..2300099(+) (dinR/lexA) [Streptomyces sp. NBC_01451]
MTTTADSATITAQDRSQSRLEPVHAMNEATNPEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQGASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQP
IPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=677281 OG595_RS09710 WP_329270060.1 2299320..2300099(+) (dinR/lexA) [Streptomyces sp. NBC_01451]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAATCCTGAGGGACCCAAGCGGTCCCTACCTGGACGACCTCCAGGAATCCGAGCGGACAGCTCGGGCCTCA
CCGACCGGCAACGGCGCGTGATCGAGGTCATCAGGGACTCCGTGCAACGACGCGGTTACCCGCCGTCGATGCGCGAGATC
GGGCAGGCAGTCGGCCTCTCCAGTACTTCATCGGTCGCACATCAGCTCATGGCTCTGGAGCGCAAGGGATTCCTGCGCCG
CGATCCGCATCGCCCGCGCGCCTATGAAGTACGCGGTTCCGACCAAGGGGCTTCCGTGCAGCCCACGGACACCGCGGGCA
AGCCCGCCGCGTCGTACGTCCCGCTGGTGGGACGCATCGCCGCAGGCGGTCCCATCCTCGCCGAGGAATCGGTCGAGGAC
GTGTTCCCGCTCCCCCGCCAACTGGTGGGCGACGGAGAACTCTTCGTCCTGAAGGTCGTCGGTGACTCGATGATCGAAGC
CGCGATCTGCGACGGCGACTGGGTCACGGTGCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTGG
ACGGCGAAGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAACTCCGCGTACCAGCCG
ATCCCCGGCGACGAGGCGACGATCCTCGGCAAGGTGGTGGCGGTCCTCCGCCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.498

81.467

0.371