Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MW401_RS16630 Genome accession   NZ_CP095510
Coordinates   3410010..3410639 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GN02270     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3405010..3415639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW401_RS16615 (MW401_16610) helD 3405252..3407306 (-) 2055 WP_001305911.1 DNA helicase IV -
  MW401_RS16620 (MW401_16615) yccF 3407429..3407875 (+) 447 WP_001261235.1 YccF domain-containing protein -
  MW401_RS16625 (MW401_16620) yccS 3407885..3410047 (+) 2163 WP_000875041.1 YccS family putative transporter -
  MW401_RS16630 (MW401_16625) sxy/tfoX 3410010..3410639 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MW401_RS16635 (MW401_16630) sulA 3410858..3411367 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MW401_RS16640 (MW401_16635) ompA 3411723..3412763 (+) 1041 WP_001309394.1 porin OmpA -
  MW401_RS16645 (MW401_16640) matP 3412839..3413291 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MW401_RS16650 (MW401_16645) ycbZ 3413477..3415237 (+) 1761 WP_000156482.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=677271 MW401_RS16630 WP_000839153.1 3410010..3410639(-) (sxy/tfoX) [Escherichia coli strain GN02270]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=677271 MW401_RS16630 WP_000839153.1 3410010..3410639(-) (sxy/tfoX) [Escherichia coli strain GN02270]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1