Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MW398_RS23050 Genome accession   NZ_CP095505
Coordinates   4550947..4551576 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GN02050     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4545947..4556576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW398_RS23030 (MW398_23025) ycbZ 4546348..4548108 (-) 1761 WP_000156501.1 AAA family ATPase -
  MW398_RS23035 (MW398_23030) matP 4548294..4548746 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  MW398_RS23040 (MW398_23035) ompA 4548824..4549864 (-) 1041 WP_001682780.1 porin OmpA -
  MW398_RS23045 (MW398_23040) sulA 4550220..4550729 (-) 510 WP_021523910.1 SOS-induced cell division inhibitor SulA -
  MW398_RS23050 (MW398_23045) sxy/tfoX 4550947..4551576 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MW398_RS23055 (MW398_23050) yccS 4551539..4553701 (-) 2163 WP_072251684.1 YccS family putative transporter -
  MW398_RS23060 (MW398_23055) yccF 4553711..4554157 (-) 447 WP_001261236.1 YccF domain-containing protein -
  MW398_RS23065 (MW398_23060) helD 4554280..4556334 (+) 2055 WP_059342277.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=677253 MW398_RS23050 WP_000839153.1 4550947..4551576(+) (sxy/tfoX) [Escherichia coli strain GN02050]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=677253 MW398_RS23050 WP_000839153.1 4550947..4551576(+) (sxy/tfoX) [Escherichia coli strain GN02050]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACTTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1