Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG511_RS17665 Genome accession   NZ_CP109478
Coordinates   3915218..3916342 (-) Length   374 a.a.
NCBI ID   WP_327578093.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01453     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3910218..3921342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG511_RS17655 (OG511_17705) gyrB 3912310..3914382 (-) 2073 WP_326712087.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OG511_RS17660 (OG511_17710) - 3914679..3915221 (-) 543 WP_326712088.1 DciA family protein -
  OG511_RS17665 (OG511_17715) recF 3915218..3916342 (-) 1125 WP_327578093.1 DNA replication/repair protein RecF Machinery gene
  OG511_RS17670 (OG511_17720) gnd 3916460..3917335 (-) 876 WP_326712090.1 decarboxylating 6-phosphogluconate dehydrogenase -
  OG511_RS17675 (OG511_17725) dnaN 3917513..3918643 (-) 1131 WP_116512073.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40941.64 Da        Isoelectric Point: 6.9324

>NTDB_id=677223 OG511_RS17665 WP_327578093.1 3915218..3916342(-) (recF) [Streptomyces sp. NBC_01453]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVRQGERQ
QLIELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQ
RNTLLKSAALARRHGGRSMDLSTLDVWDQHLARVGAELLAQRFNLIATLQPLADKAYEQLAPGGGPLALEYKPSSPEIDG
HAREELYEQLMAALEAARKQEIERGVTLVGPHRDDLVLKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVL
DDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLAGTRYAVSEGTVERV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=677223 OG511_RS17665 WP_327578093.1 3915218..3916342(-) (recF) [Streptomyces sp. NBC_01453]
ATGCACGTGACGCATCTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGATCCGGGCGTCACCGC
GTTCGTGGGCCCGAATGGGCAGGGCAAGACCAACCTTGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCGCCGCTGGTCCGCATGGGTGCCGAGCGCGCCGTCATCCGGGCGGCGGTCCGGCAGGGCGAGCGACAG
CAGCTCATCGAGCTCGAACTCAACCCGGGCAAGGCGAACCGCGCCAGGATCAACCGGTCCTCACAGGTCAGACCCCGTGA
TGTGCTCGGCATAGTGCGCACGGTCCTGTTCGCGCCGGAGGACCTCGCACTCGTCAAGGGTGACCCCGGCGAGCGCCGCC
GCTTCCTCGACGAGCTGATCACGGCCCGCTCCCCGCGCATGGCCGGCGTCCGGTCCGACTACGACCGCGTGCTCAAGCAG
CGCAACACGCTCCTCAAGTCGGCCGCGCTCGCCCGCAGGCACGGCGGCCGGTCCATGGACCTGTCGACCCTCGACGTGTG
GGACCAGCACCTCGCGCGGGTGGGCGCCGAGCTGCTCGCGCAGCGGTTCAACCTGATCGCCACGCTCCAGCCGCTCGCCG
ACAAGGCGTACGAACAGCTGGCGCCCGGCGGCGGGCCGCTGGCCCTGGAATACAAGCCCTCCTCGCCCGAAATCGACGGC
CACGCGCGCGAAGAGCTCTACGAGCAGCTGATGGCCGCCCTCGAAGCGGCCCGAAAACAGGAGATCGAGCGGGGCGTGAC
CCTCGTCGGACCGCACCGCGACGACCTGGTTCTCAAGCTCGGCCAGCTGCCGGCGAAGGGATACGCCAGCCATGGCGAGT
CCTGGTCGTACGCGCTGGCGCTGCGCCTGGCCTCGTACGACCTGCTGCGGGCCGAGGGGAACGAGCCGGTGCTCGTGCTC
GACGACGTCTTCGCGGAGCTCGACGCGCGGCGCAGGGAGCGCCTCGCCGAGCTGGTCGCCCCCGGTGAGCAGGTCCTGGT
GACGGCCGCGGTGGACGACGACGTGCCGGGCGTCCTGGCGGGCACGCGGTACGCGGTGTCCGAAGGCACGGTGGAGCGGG
TATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.921

95.187

0.361