Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MW307_RS33885 Genome accession   NZ_CP095498
Coordinates   2476473..2477849 (-) Length   458 a.a.
NCBI ID   WP_027787075.1    Uniprot ID   A0A4S5DAK7
Organism   Burkholderia cepacia strain BRDJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2471473..2482849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW307_RS33865 cls 2471807..2473246 (+) 1440 WP_059694711.1 cardiolipin synthase -
  MW307_RS33870 - 2473310..2473789 (-) 480 WP_027787077.1 glutathione peroxidase -
  MW307_RS33875 - 2473926..2475857 (+) 1932 WP_042974800.1 ATP-binding cassette domain-containing protein -
  MW307_RS33880 - 2476060..2476326 (-) 267 WP_021159088.1 DUF2866 domain-containing protein -
  MW307_RS33885 radA 2476473..2477849 (-) 1377 WP_027787075.1 DNA repair protein RadA Machinery gene
  MW307_RS33890 alr 2477861..2478931 (-) 1071 WP_021159086.1 alanine racemase -
  MW307_RS33895 lplT 2479150..2480457 (+) 1308 WP_119337960.1 lysophospholipid transporter LplT -
  MW307_RS33900 thiD 2480516..2481325 (+) 810 WP_119337961.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MW307_RS33905 - 2481344..2482309 (-) 966 WP_060084333.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48923.33 Da        Isoelectric Point: 6.7607

>NTDB_id=677216 MW307_RS33885 WP_027787075.1 2476473..2477849(-) (radA) [Burkholderia cepacia strain BRDJ]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVPETPSAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGAPADELKLLAEIQLEKIQ
AAIDTERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEVQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVDRLEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=677216 MW307_RS33885 WP_027787075.1 2476473..2477849(-) (radA) [Burkholderia cepacia strain BRDJ]
GTGGCCAAACAGAAAACCGTATACGTCTGCAGCGAGTGCGGCGGACAGACCCCGAAGTGGCAAGGGCAATGCCCGTCGTG
CCAGGCCTGGAATACGCTCGTCGAATCGGTTCCTGAAACGCCGTCGGCCCATCGTTTCCAGTCGCTTGCGAAGCGTGCGC
CCGTGCAGCGTCTCGTCGACATCGAAGCAGCCGACGTGCCGCGCTTCTCCACCGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTCGTGCCGGGCGGCGTCGTACTGATCGGCGGCGATCCGGGTATCGGCAAATCGACGCTGCTGCTGCAATC
GCTCGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAGGAATCGGCTGCGCAGATCGCGTTGCGCGCGC
AACGGCTTGCGCTGCTCGACGGCGGTGCGCCGGCAGACGAACTGAAGCTGCTCGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACACGGAACGGCCGGACGTGGCCGTGATCGACTCGATCCAGACCGTCTACTCGGAAGCGCTCACGTCGGC
CCCCGGCTCCGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAAGGCAATCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTCCTGTACTTC
GAAGGCGACACGCACTCGTCGTTTCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTTGGTGTGTT
CGCGATGACGGAGCGCGGGCTGCGCGGCGTCGCGAATCCGTCCGCACTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTTACACAGGAGGGCACGCGCCCGCTGCTCGTCGAAGTCCAGGCGCTCGTCGACACCGCGCACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGTCATGCGGG
CATCGCGTGCTTCGACCAGGACGTGTTCCTCAATGCGGTGGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTGGGGCTGGCG
GGCGAGATCCGGCCGTCGCCGCGCGGGCAGGAGCGGCTGCGCGAGGCCGCGAAGCTCGGTTTCACGTCCGCGTTGATCCC
GAAGGCGAACGCGCCGAAGCAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGATCGGCTCGAGCAGGCGATCGACCGCG
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4S5DAK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.241

100

0.496
  radA Streptococcus mitis SK321

47.162

100

0.472
  radA Streptococcus pneumoniae Rx1

46.855

100

0.472
  radA Streptococcus pneumoniae D39

46.855

100

0.472
  radA Streptococcus pneumoniae R6

46.855

100

0.472
  radA Streptococcus pneumoniae TIGR4

46.855

100

0.472
  radA Streptococcus mitis NCTC 12261

46.827

99.782

0.467