Detailed information    

insolico Bioinformatically predicted

Overview

Name   addB   Type   Machinery gene
Locus tag   MW696_RS21225 Genome accession   NZ_CP095476
Coordinates   4167514..4171014 (+) Length   1166 a.a.
NCBI ID   WP_247071003.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain MGMM1     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4162514..4176014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW696_RS21200 (MW696_21205) - 4163195..4164556 (-) 1362 WP_247070996.1 HAMP domain-containing sensor histidine kinase -
  MW696_RS21205 (MW696_21210) - 4164537..4165196 (-) 660 WP_247073303.1 response regulator transcription factor -
  MW696_RS21210 (MW696_21215) - 4165314..4165766 (-) 453 WP_247070998.1 ferritin-like domain-containing protein -
  MW696_RS21215 (MW696_21220) modA 4165949..4166740 (+) 792 WP_247071000.1 molybdate ABC transporter substrate-binding protein -
  MW696_RS21220 (MW696_21225) modB 4166749..4167405 (+) 657 WP_048355538.1 molybdate ABC transporter permease subunit -
  MW696_RS21225 (MW696_21230) addB 4167514..4171014 (+) 3501 WP_247071003.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  MW696_RS21230 (MW696_21235) addA 4171001..4174693 (+) 3693 WP_247071005.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  MW696_RS21235 (MW696_21240) sbcD 4174761..4175945 (+) 1185 WP_048356282.1 exonuclease subunit SbcD -

Sequence

Protein


Download         Length: 1166 a.a.        Molecular weight: 134054.91 Da        Isoelectric Point: 5.3648

>NTDB_id=677187 MW696_RS21225 WP_247071003.1 4167514..4171014(+) (addB) [Bacillus glycinifermentans strain MGMM1]
MGTVFLSGRSGSGKTTFILDDIREKLRHDPLGKPIIFLVPDQMTFLMEYELSKTPDLGGTIRAQVYSFSRLAWRILQHTG
GMNRPFLTGTGIQMLLRKLIEEYKSEFKVYQNASDKSGFTEQVERMLTEFKRHCLPPEGIREIMQGSGASEYEEERILSD
KLHDLYILYSKMEEALEHQYVQSEDYLTLLAEQIPHAEEIRDASIYVDGFHQFTPQEMRVLEQLMAHAREITFSLTVDEP
FAHHAPHDLHLFRMTGKAYFDLCQKARELGLDLSEIRMEGGERHSHAPELEHLERQFDERPAKPYAGTSESFCLMQAANR
RTEIEGIAREIHSLVHCGRFRLKDIAVIARNLEDYKDTIKEVFTDYELAFFIDGKESMQNHPLIELIRSTLDIIKSNWRY
EAVFRCIKTELLFPMDEPRERVRDQIDQLENYCIAYGIKGERWTSKDPFTYRRYASLDDDFAKTDREIETENMLNDLKGW
IVPPVHRLQKRLKKAGSVREMAEAVYLYLEEADVPMKLEQERRLAEESGRIAESRQHDQVWDAVIQLLDEFVEMMGDERI
SFSLFQQMVETGLESLTFSLIPPALDQVFIGNMDLSRMYGTKCTFLIGVNDGILPARPADDGVLTDDDREWLRRNGVQLA
ATGREQLLDEHFLIYMALSSPSDKLYVSYPIADAEGKTLLPSTVVKRLNELFPDHGEKVLVNEPEQLGDEEQLEFLVNKS
TALSYLTGQLGIWVRQYAISDVWWSTYNFLMGEPDRGFSKNILSSLFFRNKVHRLTERVSRDLYGENIQGSVSRMETYKA
CPFSHFASHGLKLKERQFFKLEAPDIGQLFHSALKLISDRLHELKLDWRDLTKEQCDTLSSDAVERLAPRLQKEILLSSN
RHHYVKQKLQKIIARVSGILSEHAKASGFAPVGLELGFGGKGPLPPMRFTLKNGCTMELVGRIDRVDKAESSKGLLLRIV
DYKSSDKGLDLAEVYYGLALQMLTYLDLSITYSAEWLGMKASPAGVLYFHVHDPMIQASVPLSLDEIEKEIFKKFKMKGL
LLGDQEAIKLMDTALEQGRSDIISAGLKKDGSLRSDSDVVTEDDFHLLRRHVRRTFQKAGEEITDGKVSIEPYKLKDRTP
CTYCAFKSFCQFDESLEENEYRVLKPEKDNVILEWLKKEDEADGNG

Nucleotide


Download         Length: 3501 bp        

>NTDB_id=677187 MW696_RS21225 WP_247071003.1 4167514..4171014(+) (addB) [Bacillus glycinifermentans strain MGMM1]
ATGGGAACAGTCTTTTTATCAGGCAGGTCCGGGAGTGGGAAAACGACCTTCATCTTGGATGACATCAGAGAAAAGCTTCG
CCATGACCCGCTCGGGAAACCGATCATTTTTCTAGTCCCGGATCAGATGACGTTTTTAATGGAATATGAGCTTAGTAAAA
CTCCCGATTTGGGCGGGACGATCCGCGCCCAGGTTTACAGTTTTTCAAGGCTTGCCTGGCGAATCCTCCAGCATACGGGA
GGGATGAATCGTCCGTTTCTGACGGGGACGGGCATTCAGATGCTGCTTCGCAAATTGATCGAAGAGTATAAGAGCGAGTT
TAAAGTTTACCAGAATGCAAGCGATAAAAGCGGATTTACGGAGCAGGTCGAACGGATGTTGACCGAGTTTAAACGGCACT
GCCTTCCGCCTGAGGGCATTCGCGAGATCATGCAGGGAAGCGGGGCATCGGAATATGAGGAGGAACGGATTCTTTCCGAC
AAGCTCCATGATCTCTACATTTTATACAGCAAGATGGAAGAAGCTCTCGAGCATCAATACGTTCAGTCCGAAGATTATTT
GACGCTTTTGGCAGAGCAGATTCCGCACGCCGAAGAGATCAGGGATGCTTCGATTTATGTGGACGGTTTTCATCAATTCA
CCCCGCAGGAGATGCGCGTTCTTGAACAGCTGATGGCGCATGCCCGGGAGATTACGTTTTCTTTGACAGTGGACGAGCCT
TTCGCCCATCATGCACCGCATGATCTGCATCTGTTCCGGATGACGGGAAAGGCGTATTTCGACCTTTGCCAAAAGGCGCG
GGAGCTCGGCCTCGACTTGTCAGAGATCCGCATGGAAGGGGGGGAACGGCACAGCCATGCCCCTGAGCTTGAACACTTGG
AACGGCAGTTTGATGAACGGCCGGCAAAACCGTATGCGGGAACATCGGAGTCTTTTTGCCTCATGCAGGCGGCAAACCGG
AGAACCGAAATCGAAGGGATCGCGAGAGAAATTCATTCCCTGGTGCATTGCGGCAGGTTCAGGCTGAAAGATATCGCGGT
CATCGCCCGCAATCTTGAAGATTATAAAGATACGATAAAAGAAGTGTTTACGGATTACGAACTTGCTTTTTTCATAGACG
GAAAAGAGTCCATGCAGAATCATCCGCTGATCGAACTGATCCGTTCAACCCTTGATATCATCAAAAGCAACTGGCGATAT
GAAGCGGTGTTCCGCTGCATCAAAACAGAGCTTTTATTCCCGATGGATGAGCCGAGGGAGCGGGTGCGGGATCAGATCGA
CCAGCTCGAAAACTATTGCATTGCCTATGGGATTAAAGGCGAGAGATGGACGAGCAAAGACCCGTTTACATACCGCAGAT
ACGCCTCATTGGATGATGACTTTGCCAAGACCGACCGGGAGATTGAGACAGAAAATATGCTCAATGACTTAAAGGGCTGG
ATCGTACCGCCCGTCCACCGGCTGCAAAAACGCTTGAAAAAAGCGGGATCAGTCAGGGAAATGGCTGAAGCCGTTTATCT
TTATCTGGAAGAAGCGGACGTTCCGATGAAGCTGGAACAGGAACGGCGGCTTGCCGAAGAAAGCGGCCGGATCGCGGAAT
CAAGACAGCATGACCAAGTATGGGATGCAGTCATTCAATTGTTGGACGAGTTTGTGGAAATGATGGGAGACGAGCGCATA
TCGTTTTCCTTGTTTCAGCAAATGGTCGAAACCGGTTTGGAGTCTTTAACATTCTCGCTGATTCCGCCTGCTCTTGATCA
AGTATTTATCGGGAATATGGATTTATCAAGAATGTACGGGACGAAATGCACGTTCCTCATCGGGGTGAACGACGGCATTC
TGCCGGCAAGGCCGGCAGATGACGGGGTTTTGACAGATGACGACAGAGAATGGCTGAGACGAAACGGTGTGCAGCTTGCA
GCAACGGGCAGAGAGCAGCTGCTTGACGAGCATTTTCTGATCTATATGGCGCTCTCCAGCCCGTCAGACAAGCTTTATGT
TTCGTATCCGATCGCGGATGCCGAAGGAAAGACGCTGCTTCCTTCAACCGTTGTGAAACGCTTGAACGAGCTGTTTCCAG
ATCACGGAGAAAAGGTGCTTGTCAATGAACCGGAACAGCTTGGCGATGAAGAACAGCTCGAATTTCTCGTCAATAAAAGC
ACGGCGTTAAGCTATTTGACAGGACAGCTTGGTATATGGGTGAGGCAGTATGCGATCAGTGACGTCTGGTGGAGCACATA
CAACTTTTTGATGGGTGAGCCGGACCGCGGCTTTTCGAAAAATATCCTGTCCAGCTTGTTTTTCCGGAACAAGGTGCACA
GGCTCACCGAGCGCGTGAGCCGGGATTTGTACGGAGAGAACATCCAGGGGAGCGTGTCGCGGATGGAGACGTATAAAGCC
TGTCCGTTCTCTCATTTTGCTTCCCACGGCTTAAAGCTGAAGGAACGCCAATTTTTCAAGCTTGAAGCGCCTGATATCGG
TCAGCTGTTTCATTCCGCGCTGAAGCTGATTTCAGACCGCCTTCATGAACTGAAGCTTGATTGGCGGGATCTGACGAAGG
AGCAATGCGATACATTGTCGAGCGATGCCGTGGAGCGGCTTGCGCCAAGGCTGCAAAAAGAGATATTGCTCAGTTCGAAC
CGCCACCACTATGTCAAGCAAAAGCTGCAAAAAATCATTGCAAGGGTGTCCGGCATTTTAAGCGAGCATGCAAAAGCGAG
CGGTTTTGCCCCCGTCGGGCTGGAGCTCGGATTCGGCGGCAAAGGACCGCTTCCTCCGATGCGGTTCACCCTGAAGAACG
GGTGCACAATGGAGCTTGTCGGCCGGATTGACAGGGTCGATAAAGCCGAAAGCTCAAAAGGTCTGCTGCTTCGAATCGTC
GATTACAAATCGAGCGATAAAGGCCTCGATTTAGCCGAAGTGTACTACGGTCTTGCCCTGCAGATGCTGACATACCTCGA
TTTGTCGATCACGTATTCGGCCGAATGGCTCGGAATGAAGGCGTCGCCGGCCGGGGTTCTTTATTTTCACGTGCACGATC
CGATGATTCAGGCCTCTGTGCCGCTCAGCCTTGATGAGATCGAAAAGGAAATATTCAAGAAGTTTAAGATGAAAGGGCTC
CTGTTAGGGGACCAGGAAGCGATCAAGCTGATGGACACCGCCCTTGAACAGGGCAGGTCCGACATCATCAGCGCCGGCTT
GAAGAAGGACGGTTCTCTGCGTTCGGATTCGGATGTTGTCACAGAAGATGACTTTCATTTGTTAAGGCGCCACGTCCGCC
GGACGTTTCAAAAGGCCGGCGAGGAGATTACAGACGGCAAGGTGTCGATCGAGCCTTATAAATTAAAGGACAGAACCCCT
TGCACATACTGCGCTTTCAAATCATTCTGCCAGTTTGACGAATCGCTTGAAGAGAATGAATATCGCGTATTGAAGCCGGA
AAAAGACAATGTCATATTGGAATGGCTGAAAAAGGAGGATGAGGCAGATGGAAACGGCTAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(790-1131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

74.506

99.914

0.744