Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MW696_RS21070 Genome accession   NZ_CP095476
Coordinates   4137598..4138179 (+) Length   193 a.a.
NCBI ID   WP_048355531.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain MGMM1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4132598..4143179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW696_RS21050 (MW696_21055) - 4133101..4134393 (-) 1293 WP_247070928.1 globin-coupled sensor protein -
  MW696_RS21055 (MW696_21060) - 4134498..4136027 (-) 1530 WP_048355528.1 FAD-dependent oxidoreductase -
  MW696_RS21060 (MW696_21065) - 4136163..4137020 (+) 858 WP_247070930.1 SDR family oxidoreductase -
  MW696_RS21065 (MW696_21070) - 4137093..4137326 (-) 234 WP_048355530.1 IDEAL domain-containing protein -
  MW696_RS21070 (MW696_21075) comK 4137598..4138179 (+) 582 WP_048355531.1 competence protein ComK Regulator
  MW696_RS21075 (MW696_21080) - 4138173..4138538 (-) 366 WP_048355532.1 hypothetical protein -
  MW696_RS21080 (MW696_21085) - 4138770..4139381 (+) 612 WP_247070932.1 TVP38/TMEM64 family protein -
  MW696_RS21085 (MW696_21090) lepB 4139394..4139909 (+) 516 WP_247070940.1 signal peptidase I -
  MW696_RS21090 (MW696_21095) - 4140049..4141656 (-) 1608 WP_281503721.1 S8 family serine peptidase -
  MW696_RS22360 - 4142017..4142139 (+) 123 WP_281503722.1 hypothetical protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22452.42 Da        Isoelectric Point: 8.8814

>NTDB_id=677186 MW696_RS21070 WP_048355531.1 4137598..4138179(+) (comK) [Bacillus glycinifermentans strain MGMM1]
MSNTEDLTRDSYEVNSSTMAVLPLDDGKTPASKVLETDRTFRVNMRPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPP
IMVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFRAAKYDNTFVTFVNGESLELPVSSASFENQVYRTAWLRTKFLDRIEG
NAAPKKQEFMLYPKEDQNQLIYEFILRELRKRY

Nucleotide


Download         Length: 582 bp        

>NTDB_id=677186 MW696_RS21070 WP_048355531.1 4137598..4138179(+) (comK) [Bacillus glycinifermentans strain MGMM1]
ATGAGCAATACCGAAGATTTGACAAGAGATTCTTATGAAGTAAACAGTTCGACAATGGCCGTTCTTCCTCTTGATGATGG
AAAAACGCCCGCCTCAAAAGTGCTTGAAACCGACAGGACATTTCGGGTCAATATGAGACCTTTTCAAATCATAGAGAGAA
GCTGCCGCTATTTCGGTTCAAGCTATGCAGGGAGAAAGGCCGGCACGTACGAAGTCATTAAAGTTTCCCATAAGCCGCCG
ATCATGGTGGATCATTCAAACAATATTTTTCTTTTTCCCACATTCTCCTCTACAAGGCCTCAATGCGGGTGGCTTTCCCA
TGCGCATGTTCATGAATTCCGTGCGGCTAAGTATGACAATACGTTCGTTACGTTCGTAAACGGCGAATCGCTGGAGCTGC
CGGTGTCCAGCGCGTCTTTCGAAAATCAGGTTTACCGCACGGCATGGCTGAGAACGAAATTTCTCGACCGGATTGAAGGG
AACGCCGCGCCGAAAAAACAGGAATTTATGCTGTATCCGAAGGAGGATCAGAACCAGCTGATCTATGAATTCATCCTCAG
GGAGCTGAGAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

67.526

100

0.679