Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   MW696_RS08275 Genome accession   NZ_CP095476
Coordinates   1615829..1616569 (-) Length   246 a.a.
NCBI ID   WP_247072660.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain MGMM1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1610829..1621569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW696_RS08250 (MW696_08255) mreC 1611134..1612027 (-) 894 WP_048353517.1 rod shape-determining protein MreC -
  MW696_RS08255 (MW696_08260) - 1612059..1613069 (-) 1011 WP_247072658.1 rod shape-determining protein -
  MW696_RS08260 (MW696_08265) radC 1613156..1613776 (-) 621 WP_232517722.1 DNA repair protein RadC -
  MW696_RS08265 (MW696_08270) - 1613886..1614458 (-) 573 WP_048355988.1 nucleoside triphosphate pyrophosphatase -
  MW696_RS08270 (MW696_08275) - 1614612..1615634 (-) 1023 WP_247072659.1 SPOR domain-containing protein -
  MW696_RS08275 (MW696_08280) comC 1615829..1616569 (-) 741 WP_247072660.1 A24 family peptidase Machinery gene
  MW696_RS08280 (MW696_08285) - 1616718..1618016 (-) 1299 WP_247072661.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  MW696_RS08285 (MW696_08290) - 1618092..1620734 (-) 2643 WP_247072662.1 valine--tRNA ligase -
  MW696_RS08290 (MW696_08295) - 1621196..1621387 (+) 192 WP_247072663.1 hypothetical protein -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 26224.84 Da        Isoelectric Point: 8.6376

>NTDB_id=677152 MW696_RS08275 WP_247072660.1 1615829..1616569(-) (comC) [Bacillus glycinifermentans strain MGMM1]
MYFVITGLVLGSFFNAAGRRIPQKTSLIAPRSACPVCRRPLTFLELIPVLSYILQRGKCRGCKCSISIVYPAVELAAALL
FPFAWLQVGGEGELVMALLLISLLLVAFVSDVTYMVIPDAVLCFFLPVFVAGRLLIPLDPWHSSITGAACGCLLPLFTAA
VTKGGIGGGDVKLFAVLGVVLGAKLIVLVFFLSVACGTVIGLTAVACGKLKRRDPFPFAPAILIGTLTGYFYGEPLIDLY
VQMMMA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=677152 MW696_RS08275 WP_247072660.1 1615829..1616569(-) (comC) [Bacillus glycinifermentans strain MGMM1]
ATGTACTTTGTCATAACCGGTTTGGTGCTAGGCTCTTTTTTTAATGCGGCCGGCCGCCGCATCCCTCAAAAAACCTCTTT
GATCGCTCCGCGCTCCGCCTGCCCCGTCTGCCGCCGCCCATTGACTTTTCTTGAGCTGATCCCGGTGTTGTCCTACATCT
TGCAGAGAGGAAAGTGCAGAGGATGCAAATGCTCCATTTCGATCGTCTATCCGGCCGTTGAGCTAGCGGCAGCTTTACTG
TTTCCCTTTGCATGGCTGCAGGTGGGCGGAGAAGGAGAGCTTGTCATGGCGCTTTTGCTCATTTCTTTGCTGCTGGTCGC
TTTTGTCTCAGATGTGACGTATATGGTCATACCCGATGCCGTACTTTGTTTTTTTCTGCCTGTTTTCGTCGCCGGGCGCT
TATTGATTCCGCTTGATCCCTGGCATTCGAGCATAACGGGGGCGGCTTGCGGATGCCTGTTGCCGCTCTTTACGGCTGCT
GTGACGAAAGGGGGCATCGGCGGGGGAGATGTGAAGCTGTTTGCCGTCCTTGGCGTCGTCCTCGGAGCCAAGCTGATCGT
GCTCGTGTTTTTCCTGTCCGTCGCCTGCGGAACGGTGATCGGGCTTACCGCTGTGGCTTGCGGAAAGCTCAAGCGAAGGG
ATCCCTTTCCGTTTGCGCCCGCCATTTTGATCGGAACGCTGACAGGCTATTTTTACGGCGAGCCGCTGATCGATTTGTAT
GTCCAAATGATGATGGCATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(98-202)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(5-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

50.207

97.967

0.492