Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MW696_RS06620 Genome accession   NZ_CP095476
Coordinates   1319092..1319715 (-) Length   207 a.a.
NCBI ID   WP_247072485.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain MGMM1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1314092..1324715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW696_RS06595 (MW696_06595) rpsT 1314305..1314571 (+) 267 WP_048355473.1 30S ribosomal protein S20 -
  MW696_RS06600 (MW696_06600) holA 1314627..1315667 (-) 1041 WP_048355500.1 DNA polymerase III subunit delta -
  MW696_RS06605 (MW696_06605) - 1315900..1316031 (+) 132 WP_048355472.1 YqzM family protein -
  MW696_RS06610 (MW696_06610) comEC 1316120..1318447 (-) 2328 WP_247072483.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MW696_RS06615 (MW696_06615) - 1318454..1319023 (-) 570 WP_247072484.1 ComE operon protein 2 -
  MW696_RS06620 (MW696_06620) comEA 1319092..1319715 (-) 624 WP_247072485.1 helix-hairpin-helix domain-containing protein Machinery gene
  MW696_RS06625 (MW696_06625) comER 1319797..1320618 (+) 822 WP_048355468.1 late competence protein ComER -
  MW696_RS06630 (MW696_06630) - 1320686..1321441 (-) 756 WP_247072486.1 class I SAM-dependent methyltransferase -
  MW696_RS06635 (MW696_06635) rsfS 1321441..1321794 (-) 354 WP_048355466.1 ribosome silencing factor -
  MW696_RS06640 (MW696_06640) yqeK 1321808..1322371 (-) 564 WP_048355465.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  MW696_RS06645 (MW696_06645) - 1322361..1322930 (-) 570 WP_048355464.1 nicotinate-nucleotide adenylyltransferase -
  MW696_RS06650 (MW696_06650) yhbY 1322949..1323239 (-) 291 WP_048355463.1 ribosome assembly RNA-binding protein YhbY -
  MW696_RS06655 (MW696_06655) aroE 1323233..1324066 (-) 834 WP_247072487.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21691.63 Da        Isoelectric Point: 5.8770

>NTDB_id=677148 MW696_RS06620 WP_247072485.1 1319092..1319715(-) (comEA) [Bacillus glycinifermentans strain MGMM1]
MMNMLKRYKWPAAGGMLAALFIIAVAVMSNIRGEPAGSNAVPAEAAASSSRRAAKKETKENDEIVIDLKGAVKKPGVYEM
RAGERVHHLLKKAGGTVKNAEEKQVNLAAVLQDGMVIYIPYEGEEGVQTGAGGGSSATAGGEAETVNINTASTEELQAIP
GVGPSKAEAITAYREENGPFQTVEDITNVSGIGEKTFEKIKSSISVK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=677148 MW696_RS06620 WP_247072485.1 1319092..1319715(-) (comEA) [Bacillus glycinifermentans strain MGMM1]
TTGATGAACATGCTGAAGCGCTACAAATGGCCCGCGGCTGGAGGAATGCTTGCAGCACTTTTTATCATCGCGGTCGCTGT
GATGTCAAACATACGCGGCGAACCAGCCGGGAGCAATGCTGTGCCGGCAGAGGCCGCCGCTTCTTCATCCCGCCGTGCTG
CCAAAAAGGAAACGAAAGAAAACGACGAAATTGTGATCGATCTGAAGGGCGCCGTCAAAAAGCCCGGCGTTTATGAGATG
AGGGCGGGCGAAAGGGTGCATCATTTGCTGAAAAAGGCGGGAGGTACCGTGAAAAATGCAGAAGAGAAACAAGTCAACCT
GGCCGCTGTCCTTCAGGATGGGATGGTGATTTATATTCCGTATGAAGGCGAGGAAGGCGTTCAAACCGGTGCGGGAGGCG
GATCATCGGCGACAGCGGGAGGCGAAGCAGAAACGGTTAACATTAATACCGCTTCAACAGAAGAGCTTCAGGCGATCCCG
GGCGTCGGACCTTCAAAAGCGGAAGCGATCACAGCATACCGTGAGGAGAACGGTCCGTTTCAAACGGTGGAAGACATTAC
AAACGTTTCGGGCATCGGAGAAAAAACATTTGAAAAAATAAAATCGTCAATATCGGTGAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(143-204)

SLBB domain (SLBB)

(66-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

54.369

99.517

0.541