Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   MW696_RS06125 Genome accession   NZ_CP095476
Coordinates   1229618..1230685 (-) Length   355 a.a.
NCBI ID   WP_247072460.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain MGMM1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224618..1235685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW696_RS06080 (MW696_06080) tapA 1225070..1225795 (-) 726 WP_247072456.1 amyloid fiber anchoring/assembly protein TapA -
  MW696_RS06085 (MW696_06085) - 1226062..1226385 (+) 324 WP_048405795.1 DUF3889 domain-containing protein -
  MW696_RS06090 (MW696_06090) - 1226470..1226652 (-) 183 WP_046129968.1 YqzE family protein -
  MW696_RS06095 (MW696_06095) comGG 1226735..1227100 (-) 366 WP_247072457.1 competence type IV pilus minor pilin ComGG -
  MW696_RS06100 (MW696_06100) comGF 1227112..1227597 (-) 486 WP_082142393.1 competence type IV pilus minor pilin ComGF -
  MW696_RS06105 (MW696_06105) comGE 1227512..1227859 (-) 348 WP_247072458.1 competence type IV pilus minor pilin ComGE -
  MW696_RS06110 (MW696_06110) comGD 1227843..1228286 (-) 444 WP_247072459.1 competence type IV pilus minor pilin ComGD -
  MW696_RS06115 (MW696_06115) comGC 1228286..1228579 (-) 294 WP_046129972.1 competence type IV pilus major pilin ComGC Machinery gene
  MW696_RS06120 (MW696_06120) comGB 1228594..1229631 (-) 1038 WP_048405799.1 competence type IV pilus assembly protein ComGB Machinery gene
  MW696_RS06125 (MW696_06125) comGA 1229618..1230685 (-) 1068 WP_247072460.1 competence type IV pilus ATPase ComGA Machinery gene
  MW696_RS06130 (MW696_06130) - 1230842..1231681 (-) 840 WP_247072461.1 STAS domain-containing protein -
  MW696_RS06140 (MW696_06140) - 1231894..1232274 (-) 381 WP_048405801.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  MW696_RS06145 (MW696_06145) - 1232477..1232722 (+) 246 WP_046129977.1 DUF2626 domain-containing protein -
  MW696_RS06150 (MW696_06150) - 1232771..1233409 (-) 639 WP_048405802.1 MBL fold metallo-hydrolase -
  MW696_RS06155 (MW696_06155) - 1233550..1233723 (+) 174 WP_046129979.1 DUF2759 domain-containing protein -
  MW696_RS06160 (MW696_06160) - 1233794..1234108 (-) 315 WP_247072462.1 MTH1187 family thiamine-binding protein -
  MW696_RS06165 (MW696_06165) - 1234125..1235228 (-) 1104 WP_247072463.1 hypothetical protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39780.24 Da        Isoelectric Point: 9.2825

>NTDB_id=677144 MW696_RS06125 WP_247072460.1 1229618..1230685(-) (comGA) [Bacillus glycinifermentans strain MGMM1]
MYAIESLSGKLIEEACAMRASDIHIVPGEKEAVIRFRIDDELFQKGRLTRMECSRLISHFKFLSSMDIGERRQPQSGALT
IKVNNQPVHLRMSTLPTIYDESLVIRVLPQASAPPLRSLSLFPNATAKLLSFLKHSHGLLIFTGPTGAGKTTTLYSLIEY
AKQHFNRNIITLEDPVESRSEHVLQVQVNEKAGMTYSAGLKAVLRHDPDMIILGEIRDAETAKIAVRAALTGHLVLSSMH
AKNAKGAIYRLLEFGIHMTEIEQTLVAVSAQRLVNLVCPFCGERCSLYCRMSGSGRRVSVFELLYGKSLNLCIKEAKGAY
VNSRFETLRKLIRKGIALGYLPEETYNRWVHHETE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=677144 MW696_RS06125 WP_247072460.1 1229618..1230685(-) (comGA) [Bacillus glycinifermentans strain MGMM1]
GTGTACGCGATTGAATCATTAAGCGGGAAATTGATCGAAGAGGCATGTGCGATGAGAGCTTCTGATATTCATATCGTTCC
CGGGGAAAAAGAGGCGGTTATCCGTTTTAGAATTGACGATGAACTATTTCAAAAGGGCAGACTGACGAGAATGGAGTGCT
CAAGGCTTATTTCTCACTTTAAATTTCTTTCTTCAATGGATATCGGGGAGCGAAGGCAGCCGCAAAGCGGTGCTTTAACC
ATTAAAGTGAACAATCAGCCCGTTCACTTGAGAATGTCGACTTTGCCTACCATATACGACGAAAGCTTGGTTATTCGCGT
ATTGCCGCAGGCAAGCGCACCGCCGCTCAGAAGCCTGTCTTTGTTTCCAAACGCAACGGCAAAGCTGCTGTCTTTCCTGA
AACATTCTCACGGTCTGCTGATCTTCACAGGCCCCACAGGTGCGGGAAAAACGACGACCCTGTACTCGCTGATCGAGTAT
GCCAAACAGCATTTTAACCGCAATATTATCACGCTGGAGGACCCGGTGGAATCCAGAAGCGAGCATGTTCTTCAAGTGCA
GGTGAATGAAAAAGCGGGGATGACGTATTCTGCAGGTTTAAAGGCTGTTCTGCGCCATGATCCCGACATGATCATTCTCG
GAGAAATCCGCGATGCTGAAACAGCCAAAATCGCCGTCAGAGCTGCGTTGACGGGACATCTTGTATTATCTAGCATGCAT
GCCAAAAACGCAAAAGGAGCTATATACAGATTGCTTGAGTTTGGCATTCATATGACCGAAATTGAGCAGACGCTTGTCGC
CGTAAGCGCACAGCGTCTCGTCAACCTTGTTTGTCCGTTTTGCGGGGAGCGGTGTTCTTTGTATTGCAGGATGTCGGGGA
GCGGAAGAAGAGTGAGCGTTTTTGAGCTTTTGTACGGGAAGAGTCTGAACCTGTGCATAAAAGAGGCAAAAGGCGCATAC
GTGAACAGCCGTTTTGAAACGCTGAGAAAATTGATTCGAAAAGGGATAGCGCTCGGCTATCTCCCGGAGGAAACTTATAA
CAGATGGGTGCATCATGAAACCGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

69.382

100

0.696
  pilB Glaesserella parasuis strain SC1401

39.437

100

0.394