Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MW696_RS04785 Genome accession   NZ_CP095476
Coordinates   992088..992684 (+) Length   198 a.a.
NCBI ID   WP_247073213.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain MGMM1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 987088..997684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW696_RS04745 (MW696_04745) - 988124..988630 (-) 507 WP_048356454.1 PTS glucose transporter subunit IIA -
  MW696_RS04750 (MW696_04750) - 988790..989206 (+) 417 WP_048406193.1 Hsp20/alpha crystallin family protein -
  MW696_RS04755 (MW696_04755) - 989229..989681 (-) 453 WP_048356452.1 YppG family protein -
  MW696_RS04760 (MW696_04760) - 989865..990065 (+) 201 WP_046130805.1 YppF family protein -
  MW696_RS04765 (MW696_04765) - 990084..990458 (-) 375 WP_232517691.1 YppE family protein -
  MW696_RS04770 (MW696_04770) - 990508..990738 (-) 231 WP_247072336.1 DUF5446 family protein -
  MW696_RS04775 (MW696_04775) sspM 990939..991043 (+) 105 WP_046130808.1 acid-soluble spore protein SspM -
  MW696_RS04780 (MW696_04780) - 991073..992023 (-) 951 WP_048406206.1 DUF2515 domain-containing protein -
  MW696_RS04785 (MW696_04785) recU 992088..992684 (+) 597 WP_247073213.1 Holliday junction resolvase RecU Machinery gene
  MW696_RS04790 (MW696_04790) - 992742..995399 (+) 2658 WP_057957428.1 PBP1A family penicillin-binding protein -
  MW696_RS04795 (MW696_04795) - 995432..995920 (-) 489 WP_247072338.1 YpoC family protein -
  MW696_RS04800 (MW696_04800) nth 995917..996579 (-) 663 WP_048356448.1 endonuclease III -
  MW696_RS04805 (MW696_04805) - 996597..997292 (-) 696 WP_247072340.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23000.15 Da        Isoelectric Point: 9.5228

>NTDB_id=677137 MW696_RS04785 WP_247073213.1 992088..992684(+) (recU) [Bacillus glycinifermentans strain MGMM1]
MIRYPNGKTYQPKQAASSLKKKPSYSNRGMTLEDDLNETNIYYLNHSIAVIHKKPTPVQIVHVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTAFPLQNFHDHQIEHMKQVVAQGGICFVIISAFGEIYFLEAEKLFYFWERKNQNG
RKSIRKDELEEAGHPISLGYSPRIDYIKVIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=677137 MW696_RS04785 WP_247073213.1 992088..992684(+) (recU) [Bacillus glycinifermentans strain MGMM1]
GTGATTCGTTATCCGAACGGCAAAACCTATCAGCCGAAACAAGCTGCCTCATCCTTAAAAAAGAAGCCGTCGTACAGCAA
TCGCGGAATGACCCTCGAAGACGATTTGAATGAAACGAATATATATTATCTGAATCATTCAATTGCGGTCATTCACAAAA
AACCGACACCTGTGCAGATCGTTCATGTCGATTATCCGAAGCGAAGCGCAGCGGTCATTAAAGAAGCATATTTCAAGCAG
TCGTCGACTACTGATTATAACGGGGTTTATAAAGGGCGCTACATCGATTTTGAAGCGAAAGAAACCAAAAGCAGGACGGC
TTTCCCCTTGCAGAATTTCCACGATCACCAGATCGAGCATATGAAGCAGGTCGTGGCACAGGGCGGGATATGCTTTGTTA
TTATATCCGCATTCGGCGAGATTTATTTTTTGGAAGCGGAAAAATTATTTTATTTCTGGGAGAGAAAAAACCAAAACGGC
AGAAAGTCGATCCGAAAAGACGAACTTGAAGAAGCCGGACACCCCATTTCGCTTGGATACTCGCCAAGAATTGATTATAT
TAAAGTTATTGACCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833