Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MW696_RS00940 Genome accession   NZ_CP095476
Coordinates   183157..183444 (+) Length   95 a.a.
NCBI ID   WP_048353068.1    Uniprot ID   A0A0J6ETI4
Organism   Bacillus glycinifermentans strain MGMM1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 178157..188444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW696_RS00920 (MW696_00920) - 178252..179871 (+) 1620 WP_247071425.1 ATP-binding cassette domain-containing protein -
  MW696_RS00925 (MW696_00925) - 180315..181547 (-) 1233 WP_247071427.1 aminopeptidase -
  MW696_RS00930 (MW696_00930) - 181636..181767 (-) 132 WP_096891714.1 protein YkpC -
  MW696_RS00935 (MW696_00935) mreBH 181841..182848 (-) 1008 WP_048353067.1 rod-share determining protein MreBH -
  MW696_RS00940 (MW696_00940) abrB 183157..183444 (+) 288 WP_048353068.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MW696_RS00945 (MW696_00945) - 183634..184956 (+) 1323 WP_048406291.1 ATP-binding protein -
  MW696_RS00950 (MW696_00950) - 185043..185708 (+) 666 WP_048353069.1 TrkA family potassium uptake protein -
  MW696_RS00955 (MW696_00955) ade 185832..187550 (+) 1719 WP_247071429.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10647.48 Da        Isoelectric Point: 8.9087

>NTDB_id=677131 MW696_RS00940 WP_048353068.1 183157..183444(+) (abrB) [Bacillus glycinifermentans strain MGMM1]
MKSIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDKDKIVLKKYKPYGVCLITGEITSENREYGNGNITLSPDGAK
LLLEELKSALHQAKS

Nucleotide


Download         Length: 288 bp        

>NTDB_id=677131 MW696_RS00940 WP_048353068.1 183157..183444(+) (abrB) [Bacillus glycinifermentans strain MGMM1]
TTGAAATCCATAGGAGTTGTGAGAAAAGTAGATGAACTCGGCCGCATTGTGATGCCGATTGAATTGAGAAGGGCGCTCGA
TATCTCAATTAAGGACAGCATTGAATTCTTCGTTGACAAGGATAAAATCGTTTTGAAAAAATATAAACCTTACGGCGTTT
GTCTGATAACCGGAGAGATTACATCGGAAAACCGCGAATACGGAAACGGAAACATTACGCTCAGCCCGGATGGCGCCAAA
TTGCTTTTGGAAGAACTCAAAAGCGCGCTGCACCAGGCCAAATCGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6ETI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

51.064

98.947

0.505