Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG255_RS01255 Genome accession   NZ_CP109475
Coordinates   376543..377214 (-) Length   223 a.a.
NCBI ID   WP_168525489.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01455     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 371543..382214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG255_RS01230 (OG255_01245) - 371924..372889 (+) 966 WP_329284456.1 NAD(P)-dependent oxidoreductase -
  OG255_RS01235 (OG255_01250) - 372897..373139 (-) 243 WP_168525481.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  OG255_RS01240 (OG255_01255) - 373206..374630 (-) 1425 WP_329284459.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  OG255_RS01245 (OG255_01260) - 374663..375259 (-) 597 WP_329284462.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  OG255_RS01250 (OG255_01265) - 375400..376326 (+) 927 WP_168525487.1 AraC family transcriptional regulator -
  OG255_RS01255 (OG255_01270) dinR/lexA 376543..377214 (-) 672 WP_168525489.1 transcriptional repressor LexA Regulator
  OG255_RS01260 (OG255_01275) - 377289..377510 (-) 222 WP_329284467.1 hypothetical protein -
  OG255_RS01265 (OG255_01280) - 377554..377976 (-) 423 WP_329284470.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG255_RS01270 (OG255_01285) dxs 378348..380240 (+) 1893 WP_329284471.1 1-deoxy-D-xylulose-5-phosphate synthase -
  OG255_RS01275 (OG255_01295) - 380606..382045 (+) 1440 WP_329284473.1 DUF488 family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24068.45 Da        Isoelectric Point: 6.2566

>NTDB_id=677100 OG255_RS01255 WP_168525489.1 376543..377214(-) (dinR/lexA) [Streptomyces sp. NBC_01455]
MENSAPARRGRPPGTRNAGGELTSRQSAIVGYITETVRRQGYPPSMREIGQAVNLSSTSSVAHQLMALERKGVLYRDPHR
PRAYRVRPSWAPDLGSLSQAPVEVPLVGRIAAGAPLLAEEMVEDVYSLPRQIVGDGDLFALTVSGDSMIDAAICDGDIVT
VRRQDSADHGDIVAALLGDEATIKVLLRQDGRVWLMPRNPSYEPIPGDEAQILGKVVGVLRLL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=677100 OG255_RS01255 WP_168525489.1 376543..377214(-) (dinR/lexA) [Streptomyces sp. NBC_01455]
ATGGAGAACAGCGCGCCCGCACGCCGAGGCCGTCCGCCGGGCACCCGGAACGCCGGGGGCGAGCTGACGAGCCGCCAGTC
GGCCATCGTCGGCTACATCACCGAGACGGTCCGGCGCCAGGGCTACCCGCCGTCGATGCGGGAGATCGGCCAGGCCGTCA
ACCTCTCCAGCACCTCCTCGGTCGCCCACCAGCTGATGGCTCTCGAACGCAAGGGCGTCCTCTACCGCGACCCGCACCGT
CCCCGCGCCTACCGCGTGCGGCCCTCGTGGGCGCCCGACCTGGGCAGTCTGAGCCAGGCGCCGGTCGAGGTGCCCCTCGT
AGGGCGGATCGCCGCGGGAGCACCCCTGCTCGCGGAGGAGATGGTCGAGGACGTCTACTCGCTGCCCCGCCAGATCGTCG
GCGACGGTGACCTGTTCGCCCTGACGGTCTCCGGTGACTCCATGATCGACGCGGCGATCTGCGACGGTGACATCGTGACC
GTCAGACGCCAGGACAGCGCCGACCACGGAGACATCGTCGCCGCGCTCCTCGGGGACGAGGCCACCATCAAGGTGCTGCT
CCGCCAGGACGGCCGGGTGTGGCTCATGCCCCGAAACCCGTCCTACGAGCCGATCCCCGGCGATGAAGCGCAGATCCTCG
GCAAGGTCGTCGGCGTCCTGCGCCTGCTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(105-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

42.857

91.031

0.39