Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   MU520_RS02430 Genome accession   NZ_CP095463
Coordinates   517530..518579 (+) Length   349 a.a.
NCBI ID   WP_012775295.1    Uniprot ID   A0A2K1T047
Organism   Streptococcus suis strain TJS56     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 512530..523579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU520_RS02395 - 512834..513928 (+) 1095 WP_012027602.1 sensor histidine kinase -
  MU520_RS02400 - 513925..514527 (+) 603 WP_012027601.1 response regulator transcription factor -
  MU520_RS02405 - 514835..515053 (+) 219 WP_004194736.1 YqgQ family protein -
  MU520_RS02410 - 515053..515439 (+) 387 WP_004194735.1 rhodanese-like domain-containing protein -
  MU520_RS02415 - 515496..516218 (+) 723 WP_012027598.1 lipoprotein -
  MU520_RS02420 rsmD 516526..517065 (+) 540 WP_009910569.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  MU520_RS02425 coaD 517055..517543 (+) 489 WP_012027597.1 pantetheine-phosphate adenylyltransferase -
  MU520_RS02430 sepM 517530..518579 (+) 1050 WP_012775295.1 SepM family pheromone-processing serine protease Regulator
  MU520_RS02435 - 518767..519408 (+) 642 WP_012027595.1 YutD-like domain-containing protein -
  MU520_RS02440 rlmN 519417..520529 (+) 1113 WP_012028433.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  MU520_RS02445 - 520526..521053 (+) 528 WP_012027591.1 VanZ family protein -
  MU520_RS02450 nadE 522349..523173 (-) 825 WP_004194617.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37761.83 Da        Isoelectric Point: 4.6112

>NTDB_id=676996 MU520_RS02430 WP_012775295.1 517530..518579(+) (sepM) [Streptococcus suis strain TJS56]
MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQVLTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDP
YTTVRSSEEMTGGADNEEYFRIARFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALTDDSTFKKVLNIADTVVSINGK
TFESSPDLIKYVSGLEVGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEVQSSIPIDFQTGDIGGPSAGLMF
TLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGGADKKVISAAKSGASIFFVPNNPVDVEVLKKNPKAKTNYEEAKEA
AEKAGLDIEVVPVKTVQEAIDYLKKTKGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=676996 MU520_RS02430 WP_012775295.1 517530..518579(+) (sepM) [Streptococcus suis strain TJS56]
ATGAAGAAAAATAGGAAGTTAACCTTAATTGCATCTATTGTTTTAGGAACTCTTTTGATTTGGTTTGCCGTTTTTGTTCG
TCTGCCTTATTATCTGGAAAGTCCAGGTGGAGCTGCCGATATTCGTCAGGTACTAACGGTGAACAATCAAATAGACCAAG
AGGATGGCTCTTACAACTTCACCTATGTATCAGTCCAACAGGCTACAGCTTTACAACTATTCGCTGCTCAGTTTGATCCC
TATACGACAGTTCGTTCCTCTGAAGAGATGACAGGAGGGGCCGACAATGAGGAGTATTTCCGTATAGCACGGTTTTACAT
GGAGACATCGCAAAATATGGCGAAGTACCAAGGTTTGACCTTGGCAGGAAAAGAAGTCAATCTTGATTTCTTTGGTGTCT
ATGTGCTTGCCTTGACGGATGATTCAACCTTTAAAAAAGTTCTTAATATTGCCGACACTGTTGTGAGTATCAATGGAAAA
ACATTTGAGTCTTCTCCTGATTTGATTAAATATGTGAGTGGCTTGGAGGTTGGAAGTGATGTAACAGTTGGTTATATTAG
CGCTGGTCAGGAAAAATCTGCGGACGGTAAGATTATCAAATTGTCTAATGGCAAAAACGGGATAGGTATCACTCTCGTAG
ATCATACAGAGGTTCAAAGTTCGATTCCGATTGATTTCCAAACAGGAGATATTGGTGGTCCAAGTGCTGGTCTGATGTTT
ACACTTGCCATCTATACTCAACTCGCAGAGCCTGACTTACGTGATGGTCGGATTATTGCTGGTACGGGGACTATCGAGCA
GGATGGAAAAGTAGGTGACATTGGTGGGGCTGATAAGAAGGTCATTTCGGCAGCTAAGTCTGGTGCAAGTATCTTTTTTG
TACCAAACAATCCAGTTGATGTAGAAGTTTTGAAGAAAAATCCAAAGGCTAAAACGAACTATGAAGAAGCTAAGGAAGCA
GCCGAGAAAGCAGGTCTAGATATTGAGGTAGTTCCTGTGAAAACTGTTCAAGAGGCTATTGATTATTTGAAGAAAACAAA
GGGCGAGTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(132-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K1T047

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60.807

99.427

0.605