Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUG87_RS13090 Genome accession   NZ_CP095462
Coordinates   2546893..2548272 (+) Length   459 a.a.
NCBI ID   WP_247082748.1    Uniprot ID   -
Organism   Ectobacillus sp. JY-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2541893..2553272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUG87_RS13070 (MUG87_13070) - 2542240..2542701 (+) 462 WP_247082740.1 CtsR family transcriptional regulator -
  MUG87_RS13075 (MUG87_13075) - 2542721..2543266 (+) 546 WP_247082742.1 UvrB/UvrC motif-containing protein -
  MUG87_RS13080 (MUG87_13080) - 2543270..2544343 (+) 1074 WP_247082744.1 protein arginine kinase -
  MUG87_RS13085 (MUG87_13085) clpC 2544357..2546792 (+) 2436 WP_247082746.1 ATP-dependent protease ATP-binding subunit ClpC -
  MUG87_RS13090 (MUG87_13090) radA 2546893..2548272 (+) 1380 WP_247082748.1 DNA repair protein RadA Machinery gene
  MUG87_RS13095 (MUG87_13095) disA 2548275..2549351 (+) 1077 WP_247082749.1 DNA integrity scanning diadenylate cyclase DisA -
  MUG87_RS13100 (MUG87_13100) - 2549485..2550582 (+) 1098 WP_247082750.1 PIN/TRAM domain-containing protein -
  MUG87_RS13105 (MUG87_13105) ispD 2550592..2551269 (+) 678 WP_247082751.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MUG87_RS13110 (MUG87_13110) ispF 2551281..2551760 (+) 480 WP_124565478.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MUG87_RS13115 (MUG87_13115) gltX 2551789..2553246 (+) 1458 WP_247082752.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49927.40 Da        Isoelectric Point: 6.9614

>NTDB_id=676974 MUG87_RS13090 WP_247082748.1 2546893..2548272(+) (radA) [Ectobacillus sp. JY-23]
MAKKKTKFVCQDCGYESPKWMGKCPGCGAWNTFVEELAPSASNRRLTFATGLQTEAAKPRPITDVETKQEARITTDYQEL
NRVLGGGIVGGSLVLIGGDPGIGKSTLLLQVSAQLAQHNHQVLYISGEESPKQIRLRADRLDAASSNLYVYSETDLQRIV
QYIEDMNPAFVVIDSIQTIYMPDVTSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGNIAGPRLLEHMVDTVLYF
EGERHHTYRILRAVKNRFGSTNEMGIFEMKELGLEEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEVQALISPTSF
GNPRRMATGVDHNRVSLIMAVLEKRAGLLLQNQDAYLKVAGGIKLDEPAVDLAVAVSIASSFRDKPTSPVDAVIGEVGLT
GEIRRVSRIEQRVHEAAKLGFKRVIMPSKNLGGWNIPEGIEVVGVSNIGEALRHTLGGA

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=676974 MUG87_RS13090 WP_247082748.1 2546893..2548272(+) (radA) [Ectobacillus sp. JY-23]
ATGGCTAAGAAAAAAACAAAATTTGTGTGTCAGGATTGTGGTTATGAGTCTCCGAAATGGATGGGAAAATGTCCAGGATG
TGGGGCATGGAATACATTTGTGGAAGAGCTGGCACCTTCTGCATCCAATCGAAGGCTAACGTTCGCAACAGGTTTACAAA
CAGAGGCAGCTAAGCCTCGCCCCATTACAGATGTAGAAACAAAACAAGAGGCGCGTATTACAACCGACTATCAAGAGTTG
AACCGTGTACTTGGGGGAGGAATTGTAGGCGGATCTCTAGTATTAATTGGGGGAGATCCAGGGATTGGAAAGTCCACACT
TCTTTTACAAGTTTCTGCGCAGCTGGCGCAGCATAATCATCAAGTTCTATATATATCAGGAGAAGAGTCTCCTAAGCAAA
TTAGATTACGTGCTGATCGGTTAGATGCTGCAAGCAGCAATTTGTATGTATACTCTGAAACGGACTTGCAACGAATTGTT
CAATATATTGAAGATATGAATCCGGCATTTGTCGTTATTGATTCCATTCAGACCATTTATATGCCTGATGTAACATCTGC
ACCGGGCAGTGTCTCGCAAGTACGTGAATGTACGGCGGAGTTGATGAAAATTGCAAAGACAAAAGGAATTCCTATTTTCA
TTGTGGGACATGTTACGAAGGAAGGGAATATTGCGGGGCCAAGATTACTTGAGCACATGGTGGATACTGTATTATATTTT
GAGGGTGAAAGACATCACACCTATCGCATATTACGAGCTGTGAAAAACCGTTTTGGTTCTACGAATGAAATGGGAATCTT
TGAAATGAAGGAGCTTGGACTTGAGGAAGTGTTAAATCCTTCTGAAATATTTTTGGAGGAACGCCCTGTTGGAGTGGCTG
GCTCAACAGTTGTAGCTTCTATGGAGGGGACGCGTCCTGTTTTGGTGGAAGTGCAAGCGTTGATTTCTCCTACAAGCTTT
GGCAATCCTCGTCGTATGGCTACAGGGGTAGATCATAATCGTGTATCACTTATTATGGCTGTACTAGAAAAGCGTGCCGG
GCTTCTTTTACAAAACCAAGATGCATATTTAAAGGTAGCGGGCGGTATTAAACTTGATGAACCTGCTGTTGATTTAGCAG
TTGCGGTCAGCATCGCTTCCAGCTTTAGAGATAAACCTACTTCGCCCGTTGATGCGGTAATCGGGGAAGTAGGCTTAACA
GGAGAGATTAGAAGGGTTTCTCGTATTGAACAACGGGTACACGAAGCTGCAAAGCTTGGTTTTAAAAGAGTCATTATGCC
AAGTAAAAATTTAGGTGGGTGGAATATTCCAGAAGGGATTGAAGTAGTAGGGGTATCAAACATTGGGGAAGCACTTCGTC
ATACATTAGGAGGAGCATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.471

100

0.765
  radA Streptococcus pneumoniae Rx1

63.596

99.346

0.632
  radA Streptococcus pneumoniae D39

63.596

99.346

0.632
  radA Streptococcus pneumoniae R6

63.596

99.346

0.632
  radA Streptococcus pneumoniae TIGR4

63.596

99.346

0.632
  radA Streptococcus mitis NCTC 12261

63.596

99.346

0.632
  radA Streptococcus mitis SK321

63.596

99.346

0.632