Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG445_RS15835 Genome accession   NZ_CP109470
Coordinates   3680130..3682058 (+) Length   642 a.a.
NCBI ID   WP_329287728.1    Uniprot ID   A0ABW3XCB2
Organism   Streptomyces sp. NBC_01462     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3675130..3687058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG445_RS15820 (OG445_15825) - 3676280..3676585 (+) 306 WP_168527988.1 YtxH domain-containing protein -
  OG445_RS15825 (OG445_15830) - 3676738..3678192 (+) 1455 WP_168527989.1 FGGY family carbohydrate kinase -
  OG445_RS15830 (OG445_15835) rcrP 3678397..3680130 (+) 1734 WP_329287727.1 ABC transporter ATP-binding protein Regulator
  OG445_RS15835 (OG445_15840) rcrQ 3680130..3682058 (+) 1929 WP_329287728.1 ABC transporter ATP-binding protein Regulator
  OG445_RS15840 (OG445_15845) - 3682209..3683510 (-) 1302 WP_329526295.1 RNA polymerase sigma factor -
  OG445_RS15845 (OG445_15850) dnaG 3683758..3685668 (-) 1911 WP_168527993.1 DNA primase -
  OG445_RS15850 (OG445_15855) - 3685715..3686980 (-) 1266 WP_168527994.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69227.87 Da        Isoelectric Point: 6.5165

>NTDB_id=676965 OG445_RS15835 WP_329287728.1 3680130..3682058(+) (rcrQ) [Streptomyces sp. NBC_01462]
MAGPMGRMMAGGGPDQRSLDFKGSGKRLLAQFKPERVTLYVMLCAVVLSVGLSVVGPKILGKATDLVFAGIIGRQMPAGA
TKAEVLAGMRKRGDGGMADMLSGTDFTPGKGIDFGAVGDVLLIALGTFLVAGLLMAVATRLVNRAVNKTVFHMREDLQAK
LSRLPLSFFDKRQRGEVLSRATNDLDNIQQTLQQSMGQLVNSLLTIVGVLAMMFWVSWLLALVALVTVPLSFFVATRIGK
RSQPHFVQQWRTTGILNAHIEEMYTGHTLVKVFGRQEQSAAQFAEQNEKLYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANMVQSGVASAERVFELLDAEEQAADPVPAARPDELRGRVALH
NVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTGGRVTLDGVDIASMSRDELRSAIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHTELLAAGGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=676965 OG445_RS15835 WP_329287728.1 3680130..3682058(+) (rcrQ) [Streptomyces sp. NBC_01462]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGATCAGCGCTCGCTGGACTTCAAGGGATCCGGGAAACG
GCTCCTGGCGCAGTTCAAACCCGAGCGCGTCACCCTGTACGTCATGCTGTGCGCGGTCGTGCTCAGCGTGGGGCTCTCGG
TCGTCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCGGGGATCATCGGGCGGCAGATGCCGGCCGGGGCC
ACCAAGGCCGAGGTCCTCGCGGGCATGCGCAAGCGGGGCGACGGCGGCATGGCCGACATGCTCTCGGGGACGGACTTCAC
CCCGGGCAAGGGCATCGACTTCGGCGCCGTCGGCGACGTACTGCTGATCGCGCTCGGTACGTTCCTGGTGGCCGGTCTGC
TGATGGCGGTGGCGACGCGCCTGGTGAACCGGGCCGTCAACAAGACCGTCTTCCACATGCGCGAGGACCTCCAGGCGAAG
CTGTCGCGCCTGCCCCTCTCGTTCTTCGACAAGCGGCAGCGCGGCGAGGTGCTCTCGCGGGCCACGAACGACCTCGACAA
CATCCAGCAGACGCTCCAGCAGTCGATGGGCCAGCTGGTCAACTCGCTGCTGACCATCGTGGGTGTGCTCGCGATGATGT
TCTGGGTGTCGTGGCTGCTGGCGCTCGTCGCGCTGGTCACCGTCCCGCTCTCGTTCTTCGTCGCCACCCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCATACTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGACGCCAGGAGCAGTCGGCCGCGCAGTTCGCGGAGCAGAACGAGAAGCTCTACGAGGCCG
GGTTCAAGGCCCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTGGCG
GTGGTCGGCGGGCTTCGGGTCGCGTCGGGCACGCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCCCGACAGTT
CTCGATGCCCCTGACGCAGGTCGCGTCGATGGCGAACATGGTGCAGTCCGGGGTCGCCTCCGCGGAGCGCGTCTTCGAGC
TGCTGGACGCGGAGGAGCAGGCGGCGGATCCCGTGCCGGCCGCGCGCCCGGACGAGCTGCGCGGGCGGGTGGCACTGCAC
AACGTGTCCTTCCGCTACGACCCCGAGAAGCCGCTCATCGAGGACCTGTCCCTGAAGGTGGAGCCCGGACACACGGTGGC
GATCGTCGGCCCGACGGGTGCGGGCAAGACGACGCTGGTGAACCTGCTGATGCGTTTCTACGACGTCACGGGCGGCCGGG
TCACCCTCGACGGGGTCGACATCGCGTCGATGTCCCGGGACGAACTGCGGTCCGCGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGGGCCTCGCGCGACGTGACCCGCGGGGAGATCGAGGAGGC
GGCGCGGGCGGCTCACGCGGACCGGTTCATCCGGACGCTGCCGGACGGCTACGACACCGTGATCGACGACGAGGGAAGCG
GGGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGCGCGTTCCTGTCCGATCCGGTGATCCTGGTGCTCGACGAG
GCGACCAGCTCCGTCGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGACGTCGTT
CGTCATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACACCATTCTCGTGATGGAGAACGGGTCGATCGTGGAACAGG
GGGCGCACACGGAGCTGCTCGCGGCGGGCGGCGCGTACGCGCGGCTGTACCAGGCGCAGTTCGCCCAGGCGGTGGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.55

96.885

0.383