Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG445_RS15830 Genome accession   NZ_CP109470
Coordinates   3678397..3680130 (+) Length   577 a.a.
NCBI ID   WP_329287727.1    Uniprot ID   A0ABW3XAG7
Organism   Streptomyces sp. NBC_01462     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3673397..3685130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG445_RS15800 (OG445_15805) - 3674531..3675280 (+) 750 WP_168527987.1 SDR family oxidoreductase -
  OG445_RS15820 (OG445_15825) - 3676280..3676585 (+) 306 WP_168527988.1 YtxH domain-containing protein -
  OG445_RS15825 (OG445_15830) - 3676738..3678192 (+) 1455 WP_168527989.1 FGGY family carbohydrate kinase -
  OG445_RS15830 (OG445_15835) rcrP 3678397..3680130 (+) 1734 WP_329287727.1 ABC transporter ATP-binding protein Regulator
  OG445_RS15835 (OG445_15840) rcrQ 3680130..3682058 (+) 1929 WP_329287728.1 ABC transporter ATP-binding protein Regulator
  OG445_RS15840 (OG445_15845) - 3682209..3683510 (-) 1302 WP_329526295.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62738.94 Da        Isoelectric Point: 6.5090

>NTDB_id=676964 OG445_RS15830 WP_329287727.1 3678397..3680130(+) (rcrP) [Streptomyces sp. NBC_01462]
MLIRLLRTYLSPYKKPIALLVFLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVFCNIGAVYYGA
RTASAVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLTLMTFTLLVSAPIMCVGGIVLALGLDVPLSAI
LVAVVPILGIGVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFRGANTELTKMSLATGRMLAL
MFPMVMTVVNLSSIAVVWFGAHRIASGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PTAPVLELRRHGHLEIRGAGFRYPGAEEPVLRSIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGEDVA
SVEPQLLARTVGLVPQKPYLFAGTVASNLRYGNPDATDEELWHALEVAQAKGFVEQLDNGLQSAIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETSEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=676964 OG445_RS15830 WP_329287727.1 3678397..3680130(+) (rcrP) [Streptomyces sp. NBC_01462]
GTGCTCATACGACTGCTTCGGACCTACCTCAGTCCGTACAAGAAACCCATCGCCCTCCTGGTGTTCCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCGACCCTGAACGCCCACATCATCGACAACGGCGTGGTCAAGGGGGACACCGGATACA
TCCTGTCCTTCGGTGCCCTGATGATCGGGATCTCGCTGGTCCAGGTCTTCTGCAACATCGGAGCCGTCTACTACGGCGCC
CGGACGGCGTCGGCCGTCGGCCGGGACATCCGCGCGGCCGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGCGAGGTCGG
TCATTTCGGCGCCCCGTCACTGATCACCCGCACCACGAACGACGTGCAGCAGGTGCAGATGCTGACGCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTGCTCGCCCTCGGCCTGGACGTGCCGCTGTCCGCGATC
CTGGTCGCCGTCGTGCCCATCCTCGGCATCGGCGTGACGCTGATCGTGCGCAGGCTGCGCCCGCTGTTCCGGACCATGCA
GGTGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGGGACG
ACTACGAGAAGGACCGCTTCCGGGGCGCGAACACCGAGCTGACCAAGATGTCCCTGGCCACCGGCCGGATGCTCGCACTG
ATGTTCCCGATGGTCATGACCGTCGTGAACCTCTCGTCGATCGCCGTGGTCTGGTTCGGTGCCCACCGCATCGCCAGTGG
CGGCATGCAGATCGGCGATCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGACACCTCCTCCAGCGTCGTGCCG
CCCACCGCGCCCGTCCTGGAGCTGCGGCGCCACGGTCATCTGGAGATCCGCGGCGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAGGTCCATCGACCTGGTGGCGCGGCCGGGCGAGGTGACGGCCGTGATCGGGTCGACGGGCAGCGGGA
AGTCGACCCTGCTGGGTCTGGTCCCCCGTCTCTTCGACGCCACCGACGGCCAGGTCCTGGTGGACGGCGAGGACGTGGCC
AGTGTGGAGCCGCAGTTGCTGGCCAGGACGGTCGGGCTCGTCCCGCAGAAGCCGTACCTGTTCGCGGGGACGGTGGCGAG
CAACCTGCGCTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCACAGGCCAAGGGCTTCG
TGGAACAGCTGGACAACGGCCTGCAGTCGGCGATCGCGCAGGGCGGCACGAACGTGTCGGGCGGTCAGCGCCAGCGCCTC
GCGATCGCCCGCACCCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTCGACTACGCGACGGA
CGCGGCGCTGCGGGCCGCGCTCGCCGAGGAGACCTCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GTGACGCCGACCGCATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGACGCCACCACGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.248

97.747

0.393