Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   MUG87_RS07775 Genome accession   NZ_CP095462
Coordinates   1487060..1488112 (-) Length   350 a.a.
NCBI ID   WP_247086924.1    Uniprot ID   -
Organism   Ectobacillus sp. JY-23     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1482060..1493112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUG87_RS07725 (MUG87_07725) - 1482485..1482631 (-) 147 WP_247086914.1 hypothetical protein -
  MUG87_RS07730 (MUG87_07730) - 1482710..1482937 (-) 228 WP_247086915.1 hypothetical protein -
  MUG87_RS07735 (MUG87_07735) - 1483500..1483703 (-) 204 WP_247086916.1 YqzE family protein -
  MUG87_RS07740 (MUG87_07740) - 1483747..1484238 (-) 492 WP_247086917.1 shikimate kinase -
  MUG87_RS07745 (MUG87_07745) comGG 1484235..1484594 (-) 360 WP_247086918.1 competence type IV pilus minor pilin ComGG -
  MUG87_RS07750 (MUG87_07750) - 1484599..1485021 (-) 423 WP_247086919.1 competence type IV pilus minor pilin ComGF -
  MUG87_RS07755 (MUG87_07755) - 1485005..1485238 (-) 234 WP_247086920.1 hypothetical protein -
  MUG87_RS07760 (MUG87_07760) comGD 1485297..1485746 (-) 450 WP_247086921.1 competence type IV pilus minor pilin ComGD -
  MUG87_RS07765 (MUG87_07765) comGC 1485733..1486032 (-) 300 WP_247086922.1 competence type IV pilus major pilin ComGC -
  MUG87_RS07770 (MUG87_07770) comGB 1486045..1487082 (-) 1038 WP_247086923.1 competence type IV pilus assembly protein ComGB -
  MUG87_RS07775 (MUG87_07775) comGA 1487060..1488112 (-) 1053 WP_247086924.1 competence type IV pilus ATPase ComGA Machinery gene
  MUG87_RS07780 (MUG87_07780) - 1488328..1489017 (+) 690 WP_247086925.1 metalloregulator ArsR/SmtB family transcription factor -
  MUG87_RS07785 (MUG87_07785) - 1489104..1489346 (+) 243 WP_124563402.1 DUF2626 domain-containing protein -
  MUG87_RS07790 (MUG87_07790) - 1489692..1491083 (+) 1392 WP_247086926.1 L-cystine transporter -
  MUG87_RS07795 (MUG87_07795) - 1491386..1491700 (+) 315 WP_247086927.1 hypothetical protein -
  MUG87_RS07800 (MUG87_07800) - 1491715..1491918 (-) 204 WP_124563401.1 DUF3912 family protein -
  MUG87_RS07805 (MUG87_07805) - 1492193..1492663 (-) 471 WP_247086928.1 hypothetical protein -
  MUG87_RS07810 (MUG87_07810) - 1492669..1493058 (-) 390 WP_247086929.1 group-specific protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39424.90 Da        Isoelectric Point: 9.5522

>NTDB_id=676952 MUG87_RS07775 WP_247086924.1 1487060..1488112(-) (comGA) [Ectobacillus sp. JY-23]
MSTIEQFADTVIKEAFELKASDIHVIPRQRDAVIEMRVDRDLMQKHVIAKAFAEKLISHFKFLASMDIGEKRKPQNGALE
VNTHYANLHLRLSTLPTLNQESLVIRVHLQTATKPLSHLSLFPNSAKKLLSLLHYSHGLIVFTGPTGSGKTTTMYSLLHT
AQHTLNRRVVTLEDPIEKRKDGMLQIQINERAGITYASGLKAILRHDPDIILVGEIRDEETAKVAVRASLTGHLVLTTLH
TNDAKGAVLRLLDFHITHAEVEQALLAVAAQRLVEIPCPFCREKCSPLCKKMRKVRRLSVYELLYGKDLEQVLLEARGIK
GTYSYPTLQKMMQKGYALGFVEADDLQREN

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=676952 MUG87_RS07775 WP_247086924.1 1487060..1488112(-) (comGA) [Ectobacillus sp. JY-23]
ATGAGTACAATTGAACAATTTGCTGATACAGTTATTAAGGAGGCGTTTGAGTTAAAAGCATCTGATATTCATGTGATACC
GAGACAGCGTGATGCTGTGATTGAAATGAGGGTAGATAGAGATTTAATGCAAAAGCACGTGATTGCAAAAGCATTTGCAG
AAAAACTCATTTCACATTTTAAATTTTTAGCTTCTATGGATATTGGCGAAAAACGAAAGCCGCAAAATGGCGCTCTGGAA
GTCAATACTCACTATGCGAATCTTCATTTACGTTTGTCCACACTTCCCACACTCAATCAAGAAAGTTTGGTAATTCGGGT
TCATCTGCAAACAGCCACTAAACCCCTATCCCACCTTTCGTTATTTCCAAACTCAGCTAAAAAACTTCTTTCACTTCTTC
ATTATTCACACGGATTAATTGTATTTACAGGTCCTACAGGATCTGGAAAAACGACAACCATGTATTCTCTCCTGCATACC
GCACAACATACCTTAAACCGTAGAGTAGTAACACTTGAAGATCCTATTGAAAAACGTAAAGATGGAATGCTCCAGATTCA
AATTAATGAGCGTGCTGGTATCACATATGCGAGTGGCTTAAAGGCCATTCTTCGTCACGATCCCGACATTATTTTGGTAG
GGGAAATCAGGGATGAGGAAACAGCAAAGGTAGCAGTGCGTGCAAGTTTAACAGGTCATCTCGTTCTGACTACATTGCAT
ACAAATGATGCGAAGGGAGCTGTTCTTCGATTATTAGACTTTCACATTACGCATGCTGAGGTAGAGCAAGCTCTTCTTGC
TGTAGCTGCGCAGCGTCTTGTAGAAATACCGTGCCCGTTTTGTCGAGAAAAGTGTTCTCCCCTTTGTAAAAAGATGCGTA
AAGTCCGTCGTTTAAGTGTATATGAGCTGCTCTACGGAAAAGACTTGGAGCAAGTTTTATTGGAAGCACGAGGAATAAAG
GGAACGTATAGCTATCCAACACTACAAAAAATGATGCAAAAAGGCTATGCGCTTGGCTTTGTAGAAGCTGATGATCTTCA
AAGAGAAAACTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

56.447

99.714

0.563
  pilB Glaesserella parasuis strain SC1401

42.81

87.429

0.374