Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MUG87_RS07480 Genome accession   NZ_CP095462
Coordinates   1440325..1442058 (-) Length   577 a.a.
NCBI ID   WP_247086870.1    Uniprot ID   -
Organism   Ectobacillus sp. JY-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1435325..1447058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUG87_RS07455 (MUG87_07455) - 1436721..1436954 (+) 234 WP_247086865.1 DUF2627 domain-containing protein -
  MUG87_RS07460 (MUG87_07460) - 1436988..1437128 (+) 141 WP_247086866.1 YycC family protein -
  MUG87_RS07465 (MUG87_07465) - 1437247..1437747 (-) 501 WP_247086867.1 hypothetical protein -
  MUG87_RS07470 (MUG87_07470) spo0A 1437822..1438610 (-) 789 WP_247086868.1 sporulation transcription factor Spo0A -
  MUG87_RS07475 (MUG87_07475) spoIVB 1438927..1440225 (-) 1299 WP_247086869.1 SpoIVB peptidase -
  MUG87_RS07480 (MUG87_07480) recN 1440325..1442058 (-) 1734 WP_247086870.1 DNA repair protein RecN Machinery gene
  MUG87_RS07485 (MUG87_07485) argR 1442080..1442529 (-) 450 WP_124563555.1 transcriptional regulator ArgR -
  MUG87_RS07490 (MUG87_07490) - 1442675..1443505 (-) 831 WP_247086871.1 TlyA family RNA methyltransferase -
  MUG87_RS07495 (MUG87_07495) dxs 1443509..1445398 (-) 1890 WP_247086872.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MUG87_RS07500 (MUG87_07500) - 1445658..1446545 (-) 888 WP_247086873.1 polyprenyl synthetase family protein -
  MUG87_RS07505 (MUG87_07505) - 1446542..1446766 (-) 225 WP_247086874.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 65427.43 Da        Isoelectric Point: 4.8652

>NTDB_id=676951 MUG87_RS07480 WP_247086870.1 1440325..1442058(-) (recN) [Ectobacillus sp. JY-23]
MLSELSIKNFAIIEALNISFEKGLTVLSGETGAGKSIIIDAIHLLVGGRGSAEFVRYETEKAEIEGLFYLDDEQHPCIEK
LQEFDIDVSDGMMILKRDISATGKSTCRINGKLVTLSMLKDIGKTLVDIHGQHETQDLMSEDRHMFLLDSFNNDAVSKQL
ERYRSYFEQYEQTKRKLNSLTNNEQQMAHRLDLIQFQLEEIRRADLQVGEDEELLEERVKISNFEKIYKSLSDAYRSLAG
DDCGLDHVRHAMNEVEAVSDLDTSLQGIHESVANSYYLLEDMTYQLREKLDMMEYDPARLDYIETRLNEIRTLKRKYGES
VQDILMYADKIEEEIATIENKDIHIEATRKQLKQLEEQAMTEAMKLSDLRHSLAVHLTEAIHKELQELYMAKTTFKIMLD
KQLGGVDDPVVDGVSIRLTSTGYDQVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVTSVIFDEVDTGVS
GRVAQAIAEKIYRVSIGSQVLCITHLPQVASMADTHLFIRKQIEDNRTKTSVAKLKDEEKVIEIARMISGVEITDVTTQH
ARELLQQAHNLKTGAIQ

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=676951 MUG87_RS07480 WP_247086870.1 1440325..1442058(-) (recN) [Ectobacillus sp. JY-23]
TTGTTATCGGAGTTATCGATTAAAAACTTTGCTATTATAGAAGCATTGAATATTTCATTTGAAAAAGGCCTTACGGTGCT
TAGTGGTGAAACGGGGGCAGGTAAGTCCATTATCATTGATGCCATTCATTTGTTGGTTGGAGGAAGAGGCTCTGCAGAAT
TCGTCCGTTACGAAACAGAGAAGGCTGAAATTGAGGGATTATTTTACCTAGATGATGAACAGCACCCTTGTATAGAGAAG
CTACAAGAGTTTGATATTGATGTCTCTGATGGAATGATGATTTTAAAGCGAGATATTTCAGCAACCGGCAAAAGTACTTG
TCGAATTAACGGAAAGTTAGTGACGCTAAGTATGTTAAAAGATATCGGTAAAACATTAGTGGATATACATGGGCAGCATG
AAACACAGGATCTTATGTCAGAAGATAGACATATGTTCTTATTGGATTCATTTAATAATGATGCTGTATCTAAGCAATTG
GAGCGTTATCGCTCGTATTTTGAACAATATGAGCAAACAAAGAGAAAACTGAACTCTCTAACCAACAATGAACAACAAAT
GGCTCATCGCTTAGATTTAATTCAATTTCAGCTTGAAGAAATTAGAAGAGCGGATTTACAAGTGGGAGAAGATGAAGAGC
TCTTGGAAGAGCGTGTGAAGATCTCCAATTTCGAAAAAATTTATAAATCGCTCAGTGATGCATATCGTTCTTTAGCAGGG
GATGATTGTGGTTTAGACCATGTTCGTCACGCGATGAATGAGGTAGAAGCTGTTTCTGATTTGGACACTTCATTACAAGG
TATTCATGAGAGTGTTGCCAATAGCTACTATTTACTTGAGGACATGACCTATCAGTTACGTGAGAAGCTGGATATGATGG
AGTACGATCCCGCTAGGCTGGATTATATTGAAACAAGACTGAACGAAATTCGTACATTAAAGCGTAAATATGGTGAATCC
GTCCAAGATATTTTAATGTACGCAGATAAAATAGAAGAAGAAATAGCAACCATTGAAAATAAAGATATACATATTGAAGC
GACTCGAAAGCAACTGAAGCAGTTGGAAGAGCAAGCAATGACAGAAGCCATGAAGTTAAGTGATTTGCGACATAGTCTTG
CGGTGCATCTAACGGAAGCCATTCATAAAGAGTTGCAGGAATTATATATGGCAAAAACTACTTTCAAAATTATGTTGGAC
AAGCAATTGGGTGGTGTCGATGATCCTGTGGTAGATGGTGTATCAATACGGTTAACATCAACAGGCTACGATCAAGTGGA
GTTTTATATTTCCACCAATCCCGGCGAGCCGCTCAAACCATTATCTAAGGTTGCATCCGGTGGGGAATTATCACGCATTA
TTTTGGCTCTTAAAAGTATCTTTAGTAAGCATCAAGGCGTTACTTCTGTTATTTTTGATGAAGTAGACACTGGTGTTAGT
GGCAGAGTTGCACAAGCCATTGCAGAAAAGATTTATCGGGTTTCCATCGGCTCTCAAGTGTTATGCATCACTCATCTTCC
ACAAGTTGCTTCAATGGCAGATACGCATTTGTTCATTCGTAAGCAAATTGAAGATAACCGTACAAAAACATCTGTCGCCA
AGCTTAAGGACGAAGAAAAGGTGATTGAAATTGCTCGCATGATTTCAGGTGTGGAAATAACAGATGTTACAACACAACAT
GCGCGCGAATTATTACAGCAAGCACATAATTTAAAAACAGGAGCTATCCAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.304

99.653

0.591