Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG707_RS35955 Genome accession   NZ_CP109467
Coordinates   7721403..7722428 (-) Length   341 a.a.
NCBI ID   WP_329125947.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01465     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7716403..7727428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG707_RS35925 (OG707_35945) - 7717283..7717990 (-) 708 WP_329125941.1 MBL fold metallo-hydrolase -
  OG707_RS35930 (OG707_35950) - 7718086..7718616 (+) 531 WP_329125942.1 TetR-like C-terminal domain-containing protein -
  OG707_RS35935 (OG707_35955) - 7718627..7719355 (-) 729 WP_329125943.1 MerR family transcriptional regulator -
  OG707_RS35940 (OG707_35960) - 7719487..7719963 (+) 477 WP_329125944.1 macro domain-containing protein -
  OG707_RS35945 (OG707_35965) - 7720036..7720509 (+) 474 WP_329125945.1 ATP synthase F0 subunit B -
  OG707_RS35950 (OG707_35970) - 7720553..7721440 (+) 888 WP_329125946.1 oxygenase MpaB family protein -
  OG707_RS35955 (OG707_35975) cytR 7721403..7722428 (-) 1026 WP_329125947.1 LacI family DNA-binding transcriptional regulator Regulator
  OG707_RS35960 (OG707_35980) - 7722505..7723995 (-) 1491 WP_329125948.1 M1 family metallopeptidase -
  OG707_RS35965 (OG707_35985) - 7724195..7726150 (+) 1956 WP_329125949.1 Xaa-Pro dipeptidyl-peptidase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36262.88 Da        Isoelectric Point: 5.0996

>NTDB_id=676931 OG707_RS35955 WP_329125947.1 7721403..7722428(-) (cytR) [Streptomyces sp. NBC_01465]
MPDRIRPTLEAVAAHAGVSRATASRVVNGGAGVRAPLVERVRLAVDELGYVPNHAARTLVTRRNGAVAVIIAEPEIRIFS
DPFFSLQLRGISRELTAHDSQLVLLLVEGSGDYDRIARYLAGGHVDGALAFSLHTQDRLPAVTHQVGIPTVFGGRPVHAG
AADELAVPYVDCDNRGGAGDAVRHLASLGRRRIAHIAGPQDQTSGIDRLDGYRDVVGDEDPTLVAQGAFTADSGARAMAE
LLDRHPDLDAVFAGNDLMAQGALRVLQERGRRIPEDVAVVGFDDMDSVVEATDPQLTTVRQDIEGMGRLMVRLLISGLDS
GADGTADSVIMETELVRRASA

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=676931 OG707_RS35955 WP_329125947.1 7721403..7722428(-) (cytR) [Streptomyces sp. NBC_01465]
GTGCCCGACCGAATCCGGCCCACCCTTGAAGCCGTCGCGGCCCACGCCGGCGTCTCCCGGGCGACGGCCTCGCGCGTCGT
CAACGGCGGCGCGGGGGTGCGGGCACCTCTGGTGGAGCGGGTGCGCCTCGCGGTCGACGAGCTCGGTTACGTACCGAACC
ACGCGGCCAGGACTCTGGTCACCCGGCGCAACGGCGCGGTGGCGGTCATCATCGCCGAGCCGGAGATACGGATCTTCTCC
GACCCGTTCTTCTCCCTCCAACTGCGCGGAATCAGCCGCGAGTTGACGGCGCACGACTCCCAGCTGGTGCTGCTCCTGGT
GGAGGGCAGCGGGGACTACGACCGGATCGCCCGCTATCTCGCGGGCGGCCATGTCGACGGCGCGCTCGCCTTCTCCCTGC
ACACCCAGGACCGGCTCCCGGCCGTCACCCACCAGGTCGGCATCCCGACGGTCTTCGGCGGGCGCCCGGTGCACGCCGGT
GCGGCGGACGAGCTGGCCGTGCCGTACGTCGACTGCGACAACCGGGGCGGAGCGGGCGACGCCGTACGTCATCTGGCCTC
GCTCGGGCGCCGGCGGATCGCGCACATCGCGGGCCCGCAGGACCAGACGTCCGGTATCGACCGGCTCGACGGCTACCGGG
ACGTGGTGGGCGACGAGGATCCCACGCTCGTCGCACAGGGCGCCTTCACCGCCGACAGCGGGGCCCGGGCGATGGCCGAA
CTCCTCGACCGCCACCCGGACTTGGACGCCGTCTTCGCCGGGAACGACCTGATGGCCCAGGGTGCGCTGCGGGTCCTTCA
GGAGCGGGGTCGGCGGATTCCCGAGGACGTCGCGGTCGTCGGCTTCGACGACATGGACTCGGTCGTCGAAGCCACGGATC
CGCAGCTCACCACGGTCCGCCAGGACATCGAGGGGATGGGGCGACTGATGGTGCGGCTGCTGATCAGCGGGCTGGACAGC
GGGGCCGACGGGACCGCGGACTCGGTGATCATGGAGACGGAGCTGGTGCGGAGGGCTTCCGCGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(182-340)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.143

100

0.361