Detailed information NTG0067693

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G6M96_RS18835
• Genome accession: NZ_AP022362
• Coordinates: 3819470..3820462 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain E302
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3814470..3825462

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G6M96_RS18815 (EIMP302_36520)	ygbM	3815108..3815884 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
G6M96_RS18820 (EIMP302_36530)	ygbN	3815973..3817337 (+)	1365	WP_000104433.1	GntP family transporter	-
G6M96_RS18825 (EIMP302_36540)	-	3817480..3818523 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
G6M96_RS18830 (EIMP302_36550)	-	3818748..3819299 (+)	552	WP_001179444.1	flavodoxin family protein	-
G6M96_RS18835 (EIMP302_36560)	rpoS	3819470..3820462 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
G6M96_RS18840 (EIMP302_36570)	nlpD	3820525..3821619 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
G6M96_RS18845 (EIMP302_36580)	pcm	3821804..3822430 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
G6M96_RS18850 (EIMP302_36590)	surE	3822424..3823185 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
G6M96_RS18855 (EIMP302_36600)	truD	3823166..3824215 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
G6M96_RS18860 (EIMP302_36610)	ispF	3824212..3824691 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G6M96_RS18865 (EIMP302_36620)	ispD	3824691..3825401 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=67693 G6M96_RS18835 WP_000081550.1 3819470..3820462(-) (rpoS) [Escherichia coli strain E302]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=67693 G6M96_RS18835 WP_000081550.1 3819470..3820462(-) (rpoS) [Escherichia coli strain E302]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715