Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MWN28_RS09455 Genome accession   NZ_CP095448
Coordinates   2002580..2003209 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain LS45     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1997580..2008209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWN28_RS09435 (MWN28_09435) matP 1998481..1998933 (+) 453 WP_000877166.1 macrodomain Ter protein MatP -
  MWN28_RS09440 (MWN28_09440) - 1999054..2000397 (+) 1344 Protein_1844 IS4-like element IS4 family transposase -
  MWN28_RS09445 (MWN28_09445) ompA 2000444..2001496 (-) 1053 WP_024175778.1 porin OmpA -
  MWN28_RS09450 (MWN28_09450) sulA 2001852..2002361 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MWN28_RS09455 (MWN28_09455) sxy/tfoX 2002580..2003209 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MWN28_RS09460 (MWN28_09460) yccS 2003172..2005334 (-) 2163 WP_000875033.1 YccS family putative transporter -
  MWN28_RS09465 (MWN28_09465) yccF 2005344..2005790 (-) 447 WP_001261235.1 YccF domain-containing protein -
  MWN28_RS09470 (MWN28_09470) helD 2005913..2007966 (+) 2054 Protein_1850 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=676922 MWN28_RS09455 WP_000839153.1 2002580..2003209(+) (sxy/tfoX) [Escherichia coli strain LS45]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=676922 MWN28_RS09455 WP_000839153.1 2002580..2003209(+) (sxy/tfoX) [Escherichia coli strain LS45]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACTGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCTCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1