Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG707_RS23430 Genome accession   NZ_CP109467
Coordinates   4944478..4945458 (+) Length   326 a.a.
NCBI ID   WP_329121411.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01465     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4939478..4950458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG707_RS23405 (OG707_23430) - 4939856..4940500 (+) 645 WP_329121401.1 TetR/AcrR family transcriptional regulator -
  OG707_RS23410 (OG707_23435) - 4940590..4942122 (+) 1533 WP_329121403.1 MFS transporter -
  OG707_RS23415 (OG707_23440) - 4942160..4942663 (-) 504 WP_329121405.1 MarR family transcriptional regulator -
  OG707_RS23420 (OG707_23445) - 4942707..4943702 (-) 996 WP_329121407.1 questin oxidase family protein -
  OG707_RS23425 (OG707_23450) - 4943765..4944280 (-) 516 WP_329121409.1 N-acetyltransferase family protein -
  OG707_RS23430 (OG707_23455) rpoS 4944478..4945458 (+) 981 WP_329121411.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG707_RS23435 (OG707_23460) - 4945520..4946500 (-) 981 WP_329121413.1 YafY family protein -
  OG707_RS23440 (OG707_23465) - 4946562..4948076 (+) 1515 WP_329121415.1 MFS transporter -
  OG707_RS23445 (OG707_23470) - 4948527..4949288 (+) 762 WP_329121417.1 DeoR/GlpR family DNA-binding transcription regulator -
  OG707_RS23450 (OG707_23475) pfkB 4949285..4950238 (+) 954 WP_329121419.1 1-phosphofructokinase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36375.13 Da        Isoelectric Point: 4.9556

>NTDB_id=676893 OG707_RS23430 WP_329121411.1 4944478..4945458(+) (rpoS) [Streptomyces sp. NBC_01465]
MATRAVARRTDRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQDIEAGVYAQQILDGTVESDGGGASREEL
EALVAESERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRVVREFNREHGRDPEHTEIAAELDTKPERVADVLDWARDPVSLNMPVDDAGETQFGDLLED
TSAVSPEQSVMTLLRSEELDDLIGKLDGRTASIIKMRYGIVDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKMARDT
GFDAAA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=676893 OG707_RS23430 WP_329121411.1 4944478..4945458(+) (rpoS) [Streptomyces sp. NBC_01465]
ATGGCAACCCGTGCCGTCGCCCGTCGTACCGACCGGGCAAGCAGCGTTCGCGCCGTAGGCGGGGAGATCGCCGACCGCGA
CCTGGTCGGCATGTACCTCGACGAGATCGCCCGTACGCCCCTCCTCGACGCCGCCAAGGAGGTCGAGCTCTCGCAGGACA
TCGAGGCGGGCGTCTACGCCCAGCAGATCCTCGACGGCACTGTGGAGAGCGACGGCGGCGGCGCCTCGCGCGAGGAGCTC
GAGGCGCTCGTCGCCGAGAGCGAGCGCGCCAAGGACGTCTTCATCCGCTCCAACCTCCGCCTCGTCGTCGCCGTCGCCCG
CCGCTATCCGCGGGCCGGTCTGCCGCTCCTCGACCTGATTCAGGAGGGGAACGCGGGCCTGGTGCGCGCGGTCGAGAAGT
TCGACTACGCGAAGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATCCGCCAGGCCATCACGCGCTCGATAGCGGAC
CAGTCGCGGACGATCCGGCTCCCTGTCCACCTGGTGGAGGAGCTGGGCCGCATCCGCCGCGTCGTGCGCGAGTTCAACCG
CGAGCACGGGCGCGACCCGGAGCACACGGAGATCGCCGCCGAGCTGGACACGAAGCCCGAGCGGGTCGCCGACGTACTGG
ACTGGGCGCGCGACCCGGTCTCGCTGAACATGCCGGTGGACGACGCGGGCGAGACGCAGTTCGGGGACCTCCTGGAGGAC
ACCTCGGCCGTCTCTCCCGAGCAGTCCGTGATGACGCTGCTCAGGAGCGAGGAGCTCGACGACCTGATCGGCAAGCTCGA
CGGTCGCACCGCGTCGATCATCAAGATGCGGTACGGCATCGTGGACGGCCGCGAGCGCACGCTGACCGAGGTCGGCAAGG
AGCACGGTCTGACGCGCGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGCTCGAACTGAAGAAGATGGCGCGCGACACG
GGCTTCGACGCGGCGGCGTAA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(27-60)

Sigma-70, region 4 (Sigma70_r4)

(263-315)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 region 3 (Sigma70_r3)

(173-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.333

92.025

0.362