Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OIU81_RS21375 Genome accession   NZ_CP109460
Coordinates   4801990..4802991 (+) Length   333 a.a.
NCBI ID   WP_329150260.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01454     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4796990..4807991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIU81_RS21350 (OIU81_21380) - 4797488..4799014 (+) 1527 WP_329150252.1 MFS transporter -
  OIU81_RS21355 (OIU81_21385) - 4799318..4799815 (-) 498 WP_329150254.1 MarR family transcriptional regulator -
  OIU81_RS21360 (OIU81_21390) - 4800278..4800364 (+) 87 Protein_4221 pyridoxamine 5'-phosphate oxidase family protein -
  OIU81_RS21365 (OIU81_21395) - 4800482..4801045 (-) 564 WP_329150256.1 hypothetical protein -
  OIU81_RS21370 (OIU81_21400) - 4801203..4801802 (-) 600 WP_329150258.1 N-acetyltransferase family protein -
  OIU81_RS21375 (OIU81_21405) rpoS 4801990..4802991 (+) 1002 WP_329150260.1 sigma-70 family RNA polymerase sigma factor Regulator
  OIU81_RS21380 (OIU81_21410) - 4803312..4804094 (+) 783 WP_329155261.1 DeoR/GlpR family DNA-binding transcription regulator -
  OIU81_RS21385 (OIU81_21415) pfkB 4804091..4805038 (+) 948 WP_329150262.1 1-phosphofructokinase -
  OIU81_RS21390 (OIU81_21420) - 4805157..4807256 (+) 2100 WP_329150264.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36749.14 Da        Isoelectric Point: 4.7470

>NTDB_id=676816 OIU81_RS21375 WP_329150260.1 4801990..4802991(+) (rpoS) [Streptomyces sp. NBC_01454]
MATRAVARRQDSSSASDGANSVRAIGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYAQQILDGEVTDGNAA
GASPEELEALAGESARAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEVAGELGSTPARVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAASPEQSVLTLLRSEELEDLIDRLDHRTASIIKARYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLEL
KRMARDTGFDAAA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=676816 OIU81_RS21375 WP_329150260.1 4801990..4802991(+) (rpoS) [Streptomyces sp. NBC_01454]
ATGGCAACCCGTGCCGTCGCCCGGCGTCAGGACAGCAGCAGCGCTTCTGACGGGGCCAACAGTGTTCGCGCAATAGGCGG
GGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACACCACTCCTCGACGCCGCCAAGGAGG
TCGAGCTGTCCCAGACCATCGAGGCGGGCGTCTACGCCCAGCAGATCCTGGACGGGGAGGTCACCGACGGCAATGCCGCA
GGTGCCAGCCCCGAGGAGCTGGAGGCGCTGGCCGGGGAGAGTGCCAGGGCCAAGGACGTCTTCATCCGCTCCAACCTCCG
GCTGGTGGTCGCGGTCGCCCGCCGCTATCCGCGCGCCGGGCTGCCCCTGCTCGATCTGATCCAGGAGGGCAACGCCGGTC
TGGTGCGTGCCGTGGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACGTATGCGACGTGGTGGATCCGCCAGGCC
ATCACCCGTTCCATCGCCGACCAGTCGCGCACGATCCGGCTGCCCGTGCACCTCGTGGAGGAGCTGGGCCGGATACGCCG
GGTGCAGCGCGAGTTCAACCGTGAGAACGGCCGTGACCCGGAGCCGGCGGAGGTCGCCGGCGAGCTGGGCTCCACGCCCG
CCCGTGTCACCGACGTCCTCGACTGGGCGCGCGACCCGGTCAGCCTCAACATGTCGGTGGACGACGACGGCGACACCCAG
TTCGGCGACCTGCTGGAGGACACCTCCGCGGCCTCGCCCGAGCAGTCCGTCCTGACGCTGCTGCGCAGCGAGGAGCTGGA
GGACCTGATAGACCGGCTCGACCACCGCACCGCCTCGATCATCAAGGCCCGCTACGGCATCGAGGACGGCCGTGAGCGCA
CCCTGACCGAGGTCGGCAAGCAGCACGGCCTGACCCGCGAGCGGATCCGCCAGATAGAGAAGCACGCGCTGCTGGAGCTG
AAGCGGATGGCGCGCGACACCGGATTCGACGCGGCCGCATAG

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(101-170)

Sigma-70, region 4 (Sigma70_r4)

(270-321)

Sigma-70 region 3 (Sigma70_r3)

(180-256)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.199

90.39

0.363