Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0P88_RS12040 Genome accession   NZ_CP095413
Coordinates   2836389..2837750 (-) Length   453 a.a.
NCBI ID   WP_247134813.1    Uniprot ID   -
Organism   Allomuricauda sp. SCSIO 64092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2831389..2842750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P88_RS12015 (L0P88_12015) - 2832144..2832347 (-) 204 WP_247134808.1 hypothetical protein -
  L0P88_RS12020 (L0P88_12020) - 2832399..2833163 (+) 765 WP_247134809.1 exodeoxyribonuclease III -
  L0P88_RS12025 (L0P88_12025) - 2833226..2834266 (+) 1041 WP_247134810.1 NADP(H)-dependent aldo-keto reductase -
  L0P88_RS12030 (L0P88_12030) - 2834390..2835349 (+) 960 WP_247134811.1 hypothetical protein -
  L0P88_RS12035 (L0P88_12035) - 2835346..2836293 (+) 948 WP_247134812.1 hypothetical protein -
  L0P88_RS12040 (L0P88_12040) radA 2836389..2837750 (-) 1362 WP_247134813.1 DNA repair protein RadA Machinery gene
  L0P88_RS12045 (L0P88_12045) - 2837772..2838914 (-) 1143 WP_247134814.1 alpha/beta hydrolase -
  L0P88_RS12050 (L0P88_12050) - 2838940..2839905 (-) 966 WP_247134815.1 YbhN family protein -
  L0P88_RS12055 (L0P88_12055) panD 2839907..2840257 (-) 351 WP_158775939.1 aspartate 1-decarboxylase -
  L0P88_RS12060 (L0P88_12060) panC 2840273..2841121 (-) 849 WP_247134816.1 pantoate--beta-alanine ligase -
  L0P88_RS12065 (L0P88_12065) - 2841224..2842033 (+) 810 WP_247134817.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49620.36 Da        Isoelectric Point: 8.1368

>NTDB_id=676797 L0P88_RS12040 WP_247134813.1 2836389..2837750(-) (radA) [Allomuricauda sp. SCSIO 64092]
MAKTKTAFFCQNCGAQYPKWIGQCTSCKQWNTIVEEVVQKEEKSAWKPTQSKQSKTARPLPINEITNDSEVRFNLLDQEF
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIALKVPIRTLYVSGEESQKQIKMRADRITPKAKNCYILTETKTQNIFQQI
VALEPNLVVIDSIQTLHSDYIESAPGSISQIRECTAELIKFAKESNTPVILVGHITKDGTIAGPKILEHMVDTVLQFEGD
RNYVYRILRSLKNRFGSTAELGIYEMQGSGLREVINPSEILISNNEGELSGTAIAATVEGMRPLLIEVQALVSTAVYGTP
QRSATGFNAKRLNMLLAVLEKRAGFKLAAKDVFLNITGGITVDDPAIDLAVMAAILSSNADIPIEKGTCFAAEIGLAGEV
RPIQRVDQRILEAEKLGFSTIYVSKRSKIGLKNPNIQVFLVSKIEDVVSHLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=676797 L0P88_RS12040 WP_247134813.1 2836389..2837750(-) (radA) [Allomuricauda sp. SCSIO 64092]
ATGGCTAAGACCAAAACTGCTTTTTTCTGCCAAAACTGTGGTGCCCAATATCCAAAATGGATTGGGCAGTGCACGTCTTG
TAAACAATGGAACACCATTGTTGAGGAAGTGGTCCAAAAAGAGGAAAAATCGGCCTGGAAACCCACCCAATCAAAACAGA
GCAAAACGGCCAGACCCCTTCCAATCAACGAAATAACCAACGACAGTGAAGTTCGATTCAATTTACTGGACCAAGAATTC
AATAGGGTGCTGGGCGGTGGACTGGTTCCAGGTTCCTTGACATTGTTGGGTGGGGAACCGGGGATCGGAAAAAGCACGCT
CCTACTGCAAATTGCCTTAAAAGTACCCATTAGAACACTCTATGTGTCCGGTGAAGAAAGTCAAAAGCAAATTAAGATGC
GGGCGGACAGGATTACGCCCAAGGCCAAAAATTGTTACATCCTTACCGAAACCAAGACCCAAAACATTTTTCAACAGATA
GTGGCCTTGGAACCCAATTTGGTCGTTATTGATTCCATTCAAACCCTACATTCGGATTACATAGAATCGGCTCCGGGGAG
CATTTCGCAAATACGGGAATGTACGGCGGAACTCATCAAATTTGCCAAAGAAAGCAATACTCCCGTAATCCTGGTAGGAC
ATATTACCAAGGACGGTACCATTGCAGGCCCCAAAATTTTGGAACACATGGTCGATACGGTTCTCCAATTCGAAGGAGAT
AGAAATTATGTGTATCGGATTTTACGGTCCTTGAAAAATAGATTTGGTTCTACGGCAGAGTTGGGGATTTACGAAATGCA
AGGAAGTGGCTTAAGGGAAGTGATCAATCCCTCCGAAATATTGATTTCCAATAACGAAGGGGAATTGAGTGGAACTGCCA
TTGCAGCAACGGTAGAAGGTATGCGCCCTTTGTTAATCGAAGTTCAGGCATTGGTAAGTACCGCAGTGTATGGAACCCCC
CAGCGCTCGGCCACGGGATTCAACGCGAAACGATTGAATATGCTACTGGCCGTTCTGGAAAAACGTGCTGGTTTTAAATT
GGCTGCAAAAGACGTTTTCCTTAACATTACCGGAGGAATCACAGTGGACGACCCAGCCATTGATTTGGCCGTAATGGCCG
CAATACTTTCCAGCAATGCCGATATCCCCATAGAAAAAGGGACCTGTTTTGCCGCCGAGATTGGGTTGGCCGGTGAAGTG
CGGCCCATACAACGTGTGGATCAACGAATCCTGGAGGCTGAAAAATTGGGGTTTTCTACCATTTACGTCTCCAAACGAAG
TAAAATTGGTTTAAAAAACCCTAACATACAGGTATTCCTTGTGTCTAAAATTGAGGACGTTGTAAGCCATCTTTTTGGGT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(316-425)

AAA domain (AAA_25)

(82-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

48.571

100

0.488
  radA Streptococcus mitis NCTC 12261

48.571

100

0.488
  radA Streptococcus mitis SK321

48.571

100

0.488
  radA Streptococcus pneumoniae TIGR4

48.571

100

0.488
  radA Streptococcus pneumoniae D39

48.571

100

0.488
  radA Streptococcus pneumoniae R6

48.571

100

0.488
  radA Bacillus subtilis subsp. subtilis str. 168

47.921

100

0.483