Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OIU91_RS18730 Genome accession   NZ_CP109455
Coordinates   4162611..4164512 (-) Length   633 a.a.
NCBI ID   WP_329155159.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01456     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4157611..4169512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIU91_RS18710 (OIU91_18710) - 4158380..4159471 (-) 1092 WP_329147891.1 trypsin-like peptidase domain-containing protein -
  OIU91_RS18715 (OIU91_18715) - 4159580..4160605 (-) 1026 WP_329147893.1 LacI family DNA-binding transcriptional regulator -
  OIU91_RS18720 (OIU91_18720) - 4160630..4161475 (-) 846 WP_329147895.1 response regulator transcription factor -
  OIU91_RS18725 (OIU91_18725) - 4161722..4162585 (+) 864 WP_329147897.1 alpha/beta fold hydrolase -
  OIU91_RS18730 (OIU91_18730) rcrQ 4162611..4164512 (-) 1902 WP_329155159.1 ABC transporter ATP-binding protein Regulator
  OIU91_RS18735 (OIU91_18735) rcrP 4164620..4166353 (-) 1734 WP_329147899.1 ABC transporter ATP-binding protein Regulator
  OIU91_RS18740 (OIU91_18740) - 4166577..4166840 (+) 264 WP_329147900.1 MoaD/ThiS family protein -
  OIU91_RS18745 (OIU91_18745) - 4166851..4168203 (+) 1353 WP_329147901.1 hypothetical protein -
  OIU91_RS18750 (OIU91_18750) - 4168410..4169111 (+) 702 WP_329147903.1 DUF2993 domain-containing protein -

Sequence

Protein


Download         Length: 633 a.a.        Molecular weight: 68327.81 Da        Isoelectric Point: 6.6772

>NTDB_id=676738 OIU91_RS18730 WP_329155159.1 4162611..4164512(-) (rcrQ) [Streptomyces sp. NBC_01456]
MGGQPTEKSMDFKGSGKRLLSQMRPERGVIGIALVLAVASVTLTVVGPKVLGRATDLIMSGVIGRRLPEGLSKAQAMDRL
RAHGQGGLADMLGTMPVVPGRGIDFGAVGGVLLWATLIYLGAAVFGFVQARIATRVVQRTVFRLREQVEEKLARLPLSYF
DRQQRGEVLSRATNDIDNIQQTLQQTLSQIVASLLTIAGVLVMMFWISWLLALVALVTVPVSIVVATQVGKRAQPQFVQQ
WKTTGKLNAHIEEMYTGHSLVKVFGRQRESAELFREQNDALYAAGFRAQFISGIIQPAMMFIGNLNYVMVAVVGGLRVAS
GALSIGDVQAFVQYSRQFSQPLTQVASMANLVQSGVASAERVFELLDAAEQEPDAARPARPERVEGRVEFEDVTFHYAAD
KPLIEDLSLAVHPGQTVAIVGPTGAGKTTLVNLLMRFYEVRGGRITLDGTDIAGMAREELRSHIGMVLQDTWLFGGTIAE
NIAYGAPAGTSMDKIVAAARATHVDRFVRTLPDGYETVLDDEGANVSVGEKQLITIARAFLAEPAILVLDEATSSVDTRT
EVLIQHAMARLRSGRTSFVIAHRLSTIRDADVILVMENGAIVEQGPHDALLAAGGAYARLYAAQFAEAVAEPE

Nucleotide


Download         Length: 1902 bp        

>NTDB_id=676738 OIU91_RS18730 WP_329155159.1 4162611..4164512(-) (rcrQ) [Streptomyces sp. NBC_01456]
ATGGGCGGCCAGCCCACCGAGAAGTCCATGGACTTCAAGGGCTCCGGCAAGCGGCTGCTGTCCCAGATGCGGCCCGAGCG
CGGCGTCATCGGCATCGCGCTGGTGCTGGCCGTCGCCAGCGTGACGCTGACGGTGGTGGGCCCCAAGGTCCTGGGCCGGG
CCACCGACCTGATCATGTCCGGCGTGATCGGCCGCCGGCTGCCCGAGGGGCTCAGCAAGGCCCAGGCGATGGACCGGCTG
CGCGCCCACGGTCAGGGCGGGCTCGCCGACATGCTCGGCACGATGCCGGTCGTCCCCGGCCGGGGCATCGATTTCGGTGC
CGTCGGCGGGGTCCTGCTCTGGGCCACCCTGATCTACCTGGGCGCCGCGGTGTTCGGCTTCGTCCAGGCCCGGATCGCCA
CCCGCGTCGTCCAGCGGACCGTCTTCCGGCTGCGCGAGCAGGTCGAGGAGAAGCTGGCACGGCTGCCGCTGAGCTACTTC
GACCGGCAGCAGCGCGGTGAGGTGCTCTCCCGGGCCACCAACGACATCGACAACATCCAGCAGACGCTGCAGCAGACCCT
CAGCCAGATCGTGGCCTCGCTGCTGACCATCGCCGGGGTGCTGGTGATGATGTTCTGGATCTCGTGGCTGCTGGCGCTGG
TCGCCCTGGTCACGGTCCCGGTCTCGATCGTCGTCGCCACCCAGGTCGGCAAGCGGGCCCAGCCGCAGTTCGTCCAGCAG
TGGAAGACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGCCACAGCCTGGTGAAGGTCTTCGGCCGCCA
GCGCGAGTCCGCCGAGCTGTTCCGCGAGCAGAACGACGCGCTGTACGCCGCCGGGTTCCGGGCCCAGTTCATCTCCGGGA
TCATCCAGCCCGCGATGATGTTCATCGGCAATCTGAACTACGTCATGGTGGCGGTCGTCGGCGGTCTGCGGGTCGCCTCC
GGGGCGCTGTCCATCGGTGACGTCCAGGCCTTCGTCCAGTACTCCCGGCAGTTCAGCCAGCCGCTCACCCAGGTCGCCTC
GATGGCCAACCTCGTCCAGTCCGGCGTCGCCTCCGCCGAGCGGGTCTTCGAACTCCTCGACGCCGCCGAGCAGGAGCCCG
ACGCCGCCCGCCCGGCCCGGCCCGAGCGGGTCGAGGGACGCGTCGAGTTCGAGGACGTCACCTTCCACTACGCGGCCGAC
AAGCCGCTCATCGAGGACCTGTCGCTGGCCGTCCACCCCGGGCAGACGGTGGCGATCGTCGGCCCGACGGGCGCCGGCAA
GACCACACTCGTCAATCTGCTGATGCGCTTCTACGAGGTACGCGGCGGCCGGATCACCCTCGACGGCACCGACATCGCCG
GCATGGCACGTGAGGAGCTGCGCTCCCACATCGGCATGGTCCTCCAGGACACCTGGCTCTTCGGCGGCACGATCGCGGAG
AACATCGCCTACGGAGCGCCCGCGGGCACCTCCATGGACAAGATCGTGGCGGCGGCCAGGGCCACCCATGTCGACCGCTT
CGTGCGCACCCTGCCGGACGGCTACGAGACGGTGCTCGACGACGAGGGCGCCAATGTCTCGGTCGGTGAGAAGCAGCTGA
TCACCATCGCCCGGGCCTTCCTGGCGGAACCGGCCATCCTCGTCCTGGACGAGGCCACCAGCTCGGTCGACACCCGCACC
GAGGTGCTCATCCAGCACGCGATGGCCCGGCTCCGCAGCGGCCGCACCAGCTTCGTCATCGCCCACCGGCTCTCCACGAT
CCGCGACGCCGACGTCATCCTGGTGATGGAGAACGGCGCGATCGTCGAGCAGGGCCCCCATGACGCCCTGCTGGCGGCGG
GCGGCGCCTACGCCCGCCTGTACGCGGCGCAGTTCGCCGAGGCGGTGGCCGAGCCGGAGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(405-554)

ABC transporter transmembrane region (ABC_membrane)

(31-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.444

98.262

0.417