Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG285_RS24890 Genome accession   NZ_CP109450
Coordinates   5559835..5561568 (-) Length   577 a.a.
NCBI ID   WP_356825583.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01471     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5554835..5566568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG285_RS24880 (OG285_24855) - 5556572..5557786 (+) 1215 WP_371792236.1 sigma-70 family RNA polymerase sigma factor -
  OG285_RS24885 (OG285_24860) rcrQ 5557868..5559835 (-) 1968 WP_371792237.1 ABC transporter ATP-binding protein Regulator
  OG285_RS24890 (OG285_24865) rcrP 5559835..5561568 (-) 1734 WP_356825583.1 ABC transporter ATP-binding protein Regulator
  OG285_RS24895 (OG285_24870) - 5561712..5563175 (-) 1464 WP_371792238.1 FGGY family carbohydrate kinase -
  OG285_RS24900 (OG285_24875) - 5563205..5563504 (-) 300 WP_328317365.1 YtxH domain-containing protein -
  OG285_RS24920 (OG285_24895) - 5564179..5565417 (+) 1239 WP_371792239.1 tyrosine-type recombinase/integrase -
  OG285_RS24925 (OG285_24900) - 5565552..5566088 (+) 537 WP_371792240.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62572.05 Da        Isoelectric Point: 7.4126

>NTDB_id=676692 OG285_RS24890 WP_356825583.1 5559835..5561568(-) (rcrP) [Streptomyces sp. NBC_01471]
MLITLLRTYVRPYKKPMALLALLQLLQTCATLYLPTLNADIIDNGVVKGDSGYILSFGGLMIAISVVQVICNMGAVYFGA
RTASALGRDIRAGVFDRVQSFSAREVGHFGAPSLITRTTNDVQQIQMLVLMSFTLMASAPIMCVGAIVLALGQDVPLSLV
LIAVVPVMLVLVSLIVRRMRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVKDAYEKERFKGANTELTDVSLGTARLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGAMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTDSSVVP
PVRPVTELARHGHLEIRGAGFKYPGAEASVLREVALEALPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGTDVR
ELDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALDVAQAKGFVEKLEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQQPEIYLFDDSFSALDYATDAALRTALRRETARATVVIVAQRVSTIRDADRIVVMDEGRVVGTGRHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=676692 OG285_RS24890 WP_356825583.1 5559835..5561568(-) (rcrP) [Streptomyces sp. NBC_01471]
GTGCTCATAACACTTCTGCGGACCTATGTGCGCCCGTACAAGAAACCCATGGCTCTGCTGGCGCTGCTTCAGCTGCTCCA
GACCTGCGCCACCCTCTATCTGCCGACGCTCAACGCGGACATCATCGACAACGGTGTCGTGAAGGGTGACTCGGGTTACA
TCCTGAGTTTCGGCGGGCTCATGATCGCCATCAGCGTGGTGCAGGTGATCTGCAACATGGGCGCCGTCTACTTCGGTGCC
AGGACCGCGTCCGCACTCGGCCGGGACATCCGTGCCGGCGTCTTCGACCGGGTGCAGTCGTTCTCCGCCCGCGAGGTCGG
GCACTTCGGCGCCCCGTCCCTCATCACCCGGACGACCAATGACGTCCAGCAGATCCAGATGCTGGTCCTGATGTCGTTCA
CCCTGATGGCCTCGGCGCCGATCATGTGCGTGGGCGCCATCGTGCTGGCGCTCGGCCAGGACGTGCCGCTCTCGCTCGTA
CTGATCGCGGTCGTCCCGGTCATGCTCGTGCTGGTCTCCCTGATCGTCCGGCGGATGCGGCCGCTCTTCCGGAAGATGCA
GGTCCGGCTCGACACGGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGAAGGACG
CGTACGAGAAGGAGCGCTTCAAGGGCGCCAACACCGAGCTGACCGATGTCTCCCTGGGGACCGCGCGGCTGATGGCCCTG
ATGTTCCCGACGGTGATGACCGTGGTGAACGTGTCGTCGATCGCGGTGGTCTGGTTCGGCGCGCACCGGATCGACAGCGG
CGCGATGCAGATCGGGGCGCTCACCGCGTTCCTCTCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGGATCCAGGAGGTGCTCGGCACCGACTCCAGCGTGGTGCCG
CCGGTCCGTCCCGTCACCGAGCTGGCCAGGCACGGCCATCTGGAGATCCGCGGGGCCGGGTTCAAGTACCCGGGCGCCGA
GGCGTCGGTGCTGCGGGAGGTCGCCCTGGAGGCGCTGCCGGGTGAGACCACCGCGGTGATCGGATCGACCGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTACCCCGGCTGTTCGACGCCACGGGCGGCGAGGTGCTGGTGGACGGCACCGACGTACGG
GAACTCGACCCCGTCCTGCTGGCGAAGACCGTGTCCCTGGTGCCGCAGAAGCCGTATCTCTTCTCCGGGACCGTCGCGAC
GAACCTTCGCTACGGGAACCCGGACGCGACCGATGAGGAGCTGTGGCACGCGCTGGACGTGGCGCAGGCCAAGGGGTTCG
TCGAGAAGCTGGAGGGCGGGCTCAACGCGCCGATCGCCCAGGGCGGTACCAATGTCTCCGGCGGGCAGCGGCAGCGGCTG
GCGATCGCCAGGACGCTGGTCCAGCAGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGACCGCGCTGCGGCGCGAGACCGCCCGGGCGACCGTGGTGATCGTCGCCCAGCGCGTCTCGACCATCC
GCGACGCGGACCGGATCGTCGTCATGGACGAGGGCCGGGTCGTCGGGACCGGCAGGCACCACGAGCTGATGGACGGCAAT
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.966

100

0.404