Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG285_RS24885 Genome accession   NZ_CP109450
Coordinates   5557868..5559835 (-) Length   655 a.a.
NCBI ID   WP_371792237.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01471     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5552868..5564835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG285_RS24870 (OG285_24845) - 5553118..5554380 (+) 1263 WP_356825589.1 FAD-dependent oxidoreductase -
  OG285_RS24875 (OG285_24850) dnaG 5554537..5556438 (+) 1902 WP_356825587.1 DNA primase -
  OG285_RS24880 (OG285_24855) - 5556572..5557786 (+) 1215 WP_371792236.1 sigma-70 family RNA polymerase sigma factor -
  OG285_RS24885 (OG285_24860) rcrQ 5557868..5559835 (-) 1968 WP_371792237.1 ABC transporter ATP-binding protein Regulator
  OG285_RS24890 (OG285_24865) rcrP 5559835..5561568 (-) 1734 WP_356825583.1 ABC transporter ATP-binding protein Regulator
  OG285_RS24895 (OG285_24870) - 5561712..5563175 (-) 1464 WP_371792238.1 FGGY family carbohydrate kinase -
  OG285_RS24900 (OG285_24875) - 5563205..5563504 (-) 300 WP_328317365.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 70255.88 Da        Isoelectric Point: 5.8746

>NTDB_id=676691 OG285_RS24885 WP_371792237.1 5557868..5559835(-) (rcrQ) [Streptomyces sp. NBC_01471]
MAGPGGRMMAGPTQKSMDFKGSAKRLLRQLSQDRAALFTMLAAVVGSVALSVVGPKILGRATDLIFAGIIGRQLPAGTTK
AQALKALHAKGQGAMADMLSGVDFTPGKGIDFSQVGEILLLALVAFACAGLLMLVTTRLAARIINQAMYRMREEIQAKLS
RLPLSYFDRAKRGEVLSRTTNDVDNIGQTMQQTMGQLMNSLLTIIGVLAMMFWISWILALVALVTVPLSVLVATRVGKRS
QPQFVQQWKVTGKLNAHVEEMYTGHALVKIFGRQAESAEAFREQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVAVI
GGLRVASGTLSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERIFELLDAEEQTPDADASASGTESGAESGVGTA
VHPVAVRGSIALEKVSFRYEADKPLIDDLSLAVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGTDIARMTRE
ELRSGIGMVLQDTWLFGGTIAENIAYGSSHAVTREEVEEAARAAHADRFIRTLPEGYDTVIDDEGTGVSAGEKQLITIAR
AFLSDPVILVLDEATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGSHEELLAADGAYA
RLYAAQFAQAVVEVD

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=676691 OG285_RS24885 WP_371792237.1 5557868..5559835(-) (rcrQ) [Streptomyces sp. NBC_01471]
ATGGCCGGTCCTGGTGGACGCATGATGGCAGGACCGACCCAGAAGTCCATGGACTTCAAGGGGTCGGCCAAGCGGCTGCT
GCGGCAGCTGTCGCAGGACCGCGCGGCACTGTTCACGATGCTGGCGGCGGTCGTCGGCAGCGTCGCGCTCTCGGTCGTCG
GACCGAAGATCCTGGGCCGGGCCACCGACCTGATCTTCGCGGGGATCATCGGCCGGCAGCTGCCCGCGGGCACGACGAAG
GCGCAGGCCCTGAAGGCCCTGCACGCCAAGGGCCAGGGCGCGATGGCCGACATGCTCTCCGGTGTGGACTTCACCCCGGG
CAAGGGCATCGACTTCTCCCAGGTGGGCGAGATCCTGCTGCTCGCGCTGGTGGCCTTCGCCTGTGCGGGGCTGCTGATGC
TCGTCACCACCCGGCTCGCGGCCCGGATCATCAACCAGGCCATGTACCGGATGCGTGAGGAGATCCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACAGGGCGAAGCGCGGCGAGGTGCTCAGCCGGACGACCAACGACGTCGACAACATCGG
CCAGACGATGCAGCAGACCATGGGCCAGCTCATGAACTCGCTGCTGACCATCATCGGCGTGCTGGCGATGATGTTCTGGA
TCTCCTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTACCGCTCTCGGTGCTGGTGGCCACGCGCGTCGGCAAGCGGTCC
CAGCCGCAGTTCGTGCAGCAGTGGAAGGTCACCGGCAAGCTCAACGCCCACGTCGAGGAGATGTACACCGGGCACGCCCT
GGTCAAGATCTTCGGGCGGCAGGCGGAGTCGGCCGAGGCCTTCCGCGAGCAGAACGACGCGCTGTACGAGGCCGGGTTCA
AGGCCCAGTTCAACAGCGGCATCATGCAGCCGCTGATGATGTTCGTCTCCAACCTCAACTATGTGCTGGTGGCGGTCATC
GGCGGGCTGCGGGTCGCTTCCGGCACGCTGTCGATCGGTGATGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTCGCA
GCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTGGCGTCCGCCGAGCGGATCTTCGAGCTGCTCG
ACGCGGAGGAGCAGACGCCCGACGCCGACGCCTCCGCTTCCGGCACGGAATCCGGCGCGGAATCCGGCGTCGGCACGGCC
GTGCACCCGGTGGCGGTCCGCGGCAGCATCGCGCTGGAGAAGGTCTCCTTCCGGTACGAGGCCGACAAGCCGCTCATCGA
CGACCTGTCGCTCGCGGTCGAACCGGGCCACACGGTCGCGATCGTCGGACCGACCGGCGCGGGCAAGACGACGCTGGTCA
ACCTGCTCATGCGGTTCTACGAGGTCACCGGCGGGCGGATCACGCTCGACGGGACCGACATCGCCAGGATGACGCGAGAG
GAACTGCGCTCCGGGATAGGCATGGTGCTCCAGGACACCTGGCTCTTCGGCGGCACCATCGCGGAGAACATCGCGTACGG
CTCGTCGCACGCCGTGACCCGCGAGGAGGTCGAGGAGGCGGCGCGGGCGGCCCATGCCGACCGGTTCATCCGCACCCTGC
CCGAGGGCTACGACACGGTCATCGACGACGAGGGTACGGGGGTGAGCGCGGGCGAGAAGCAGCTGATCACGATCGCGCGG
GCCTTCCTCTCCGATCCGGTGATCCTGGTGCTCGACGAGGCGACCAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCA
GAAGGCGATGGCCCGTCTGGCGCACGGCCGCACCAGCTTCGTCATCGCGCACCGGCTCTCCACGATCCGGGACGCGGATG
TGATTCTGGTGATGGAGAACGGGTCGATCGTGGAGCAGGGTTCGCACGAGGAGTTGCTGGCTGCGGACGGGGCTTACGCG
CGGCTCTACGCGGCGCAGTTCGCCCAGGCCGTGGTGGAGGTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(427-576)

ABC transporter transmembrane region (ABC_membrane)

(48-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.424

94.351

0.391