Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG285_RS20880 Genome accession   NZ_CP109450
Coordinates   4671407..4672387 (+) Length   326 a.a.
NCBI ID   WP_356828254.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01471     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4666407..4677387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG285_RS20855 (OG285_20845) - 4666514..4667152 (+) 639 WP_356828244.1 TetR/AcrR family transcriptional regulator -
  OG285_RS20860 (OG285_20850) - 4667515..4669059 (+) 1545 WP_371791853.1 MFS transporter -
  OG285_RS20865 (OG285_20855) - 4669217..4669732 (-) 516 WP_356828248.1 MarR family transcriptional regulator -
  OG285_RS20870 (OG285_20860) - 4669822..4670601 (+) 780 WP_356828250.1 class III extradiol ring-cleavage dioxygenase -
  OG285_RS20875 (OG285_20865) - 4670621..4671223 (-) 603 WP_371791854.1 N-acetyltransferase family protein -
  OG285_RS20880 (OG285_20870) rpoS 4671407..4672387 (+) 981 WP_356828254.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG285_RS20885 (OG285_20875) - 4672633..4674255 (-) 1623 WP_371791855.1 MFS transporter -
  OG285_RS20890 (OG285_20880) - 4674318..4675307 (+) 990 WP_371791856.1 helix-turn-helix transcriptional regulator -
  OG285_RS20895 (OG285_20885) - 4675551..4676297 (-) 747 WP_371791857.1 DUF6227 family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36481.17 Da        Isoelectric Point: 4.9534

>NTDB_id=676682 OG285_RS20880 WP_356828254.1 4671407..4672387(+) (rpoS) [Streptomyces sp. NBC_01471]
MATRAVARRSDRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAEKEVELSQTIEAGVYAQQILDGSVQSEAGGASREEL
DALIAAGERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHEEIAAELDTKPARVSDVLDWARDPVSLNMPVDDQGETQFGDLLED
TSAVSPEQSVMTLLRSEELDELIGRLDHRTASIIKMRFGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKMADDV
GFDAAA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=676682 OG285_RS20880 WP_356828254.1 4671407..4672387(+) (rpoS) [Streptomyces sp. NBC_01471]
ATGGCAACCCGTGCCGTCGCCCGTCGATCCGACCGGGCAAGCAGCGTTCGCGCCGTAGGCGGGGAGATCGCCGACCGCGA
CCTGGTCGGCATGTACCTCGACGAAATCGCACGTACGCCGCTGCTCGACGCCGAAAAGGAGGTTGAGCTGTCCCAGACCA
TCGAGGCCGGGGTGTACGCCCAGCAGATCCTCGACGGTTCCGTGCAGAGTGAGGCGGGCGGGGCCTCGCGTGAAGAGCTG
GATGCGCTGATCGCCGCCGGGGAGCGCGCCAAGGACGTCTTCATCCGGTCCAACCTCCGGCTGGTCGTCGCTGTCGCCCG
CCGCTATCCGCGAGCCGGTCTGCCGCTGCTCGACCTCATCCAGGAGGGCAACGCGGGTCTGGTGCGCGCGGTCGAGAAGT
TCGACTACGCCAAGGGCTTCAAGTTCTCCACGTATGCGACCTGGTGGATCCGGCAGGCCATCACCCGGTCCATAGCGGAC
CAGTCGCGCACCATCCGGCTCCCTGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGTCCAGCGTGAGTTCAACCG
GGAGCACGGCCGCGACCCGGAGCACGAGGAGATCGCCGCCGAGCTGGACACCAAGCCGGCCCGGGTGAGCGACGTGCTGG
ACTGGGCCCGTGACCCGGTCAGCCTGAACATGCCGGTCGACGACCAGGGCGAGACCCAGTTCGGGGACCTCCTGGAGGAC
ACGTCGGCGGTGTCGCCCGAGCAGTCGGTGATGACGCTGCTGCGCAGTGAGGAGCTCGACGAGCTGATCGGCAGGCTCGA
TCACCGCACCGCCTCGATCATCAAGATGCGCTTCGGTATCGACGACGGCCGGGAGCGGACGCTGACCGAGGTCGGCAAGG
AGCACGGTCTGACGCGCGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTCGAACTGAAGAAGATGGCCGACGACGTG
GGCTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(173-249)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70, region 4 (Sigma70_r4)

(263-315)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(27-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.333

92.025

0.371