Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG285_RS07250 Genome accession   NZ_CP109450
Coordinates   1642851..1643645 (+) Length   264 a.a.
NCBI ID   WP_371790544.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01471     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1637851..1648645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG285_RS07235 (OG285_07230) - 1637897..1638502 (-) 606 WP_371790542.1 YdbC family protein -
  OG285_RS07240 (OG285_07235) - 1638776..1641661 (-) 2886 WP_371790543.1 vitamin B12-dependent ribonucleotide reductase -
  OG285_RS07245 (OG285_07240) nrdR 1641787..1642299 (-) 513 WP_356829967.1 transcriptional regulator NrdR -
  OG285_RS07250 (OG285_07245) dinR/lexA 1642851..1643645 (+) 795 WP_371790544.1 transcriptional repressor LexA Regulator
  OG285_RS07255 (OG285_07250) - 1643818..1645788 (-) 1971 WP_356829963.1 ATP-dependent DNA helicase -
  OG285_RS07260 (OG285_07255) - 1645827..1647632 (-) 1806 WP_371790545.1 IucA/IucC family siderophore biosynthesis protein -
  OG285_RS07265 (OG285_07260) - 1647809..1648564 (-) 756 WP_371790546.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28575.37 Da        Isoelectric Point: 7.4239

>NTDB_id=676654 OG285_RS07250 WP_371790544.1 1642851..1643645(+) (dinR/lexA) [Streptomyces sp. NBC_01471]
MTTTADTATITAQDRSQNRLEPVHAMNDAATGPEGQLPPRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQTTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
AAYQPIPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=676654 OG285_RS07250 WP_371790544.1 1642851..1643645(+) (dinR/lexA) [Streptomyces sp. NBC_01471]
GTGACCACGACCGCAGACACCGCCACCATCACCGCCCAGGATCGTTCGCAGAACCGACTCGAGCCGGTGCATGCCATGAA
TGACGCAGCTACGGGCCCGGAGGGCCAGCTGCCCCCGCGCCCCGCGCGCTCGCTGCCCGGACGGCCTCCCGGCATCCGGG
CGGACAGCTCCGGGCTCACCGACCGGCAACGACGGGTCATCGAGGTGATCAGGGACTCCGTGCAACGCCGTGGATACCCG
CCCTCCATGCGCGAGATCGGCCAGGCGGTGGGGCTGTCCAGCACCTCGTCCGTCGCCCACCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGCCGCGACCCGCACCGGCCCCGGGCGTACGAGGTCAGGGGCTCCGACCAGCCGAGCACCCAGACCA
CCGACACCACGGGCAAGCCCGCAGCGTCGTACGTCCCGCTGGTCGGCCGGATCGCCGCCGGTGGGCCGATCCTGGCTGAG
GAGTCGGTCGAGGATGTCTTCCCGCTCCCCCGCCAGCTGGTCGGTGACGGCGAGCTGTTCGTCCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTCACCGTGCGACGCCAGCCGGTCGCGGAGAACGGCGACATCG
TGGCAGCCATGCTGGAGGGCGAAGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTGTGGCTGCTGCCGCACAAT
GCCGCCTACCAGCCGATTCCCGGTGACGACGCCACGATCCTCGGCAAGGTAGTGGCTGTGCTCCGACGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(57-120)

Peptidase S24-like (Peptidase_S24)

(146-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371