Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MWG54_RS09660 Genome accession   NZ_CP095377
Coordinates   1867616..1867903 (+) Length   95 a.a.
NCBI ID   WP_000648325.1    Uniprot ID   A0A9W5QIM5
Organism   Bacillus cereus strain SEM-15     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1862616..1872903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWG54_RS09640 (MWG54_09640) - 1863792..1863989 (+) 198 WP_001048102.1 DUF4083 domain-containing protein -
  MWG54_RS09645 (MWG54_09645) - 1864021..1864482 (+) 462 WP_000024999.1 NUDIX hydrolase -
  MWG54_RS09650 (MWG54_09650) nadE 1864532..1865350 (-) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  MWG54_RS09655 (MWG54_09655) - 1865620..1867500 (+) 1881 WP_246962584.1 ABC transporter permease -
  MWG54_RS09660 (MWG54_09660) abrB 1867616..1867903 (+) 288 WP_000648325.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MWG54_RS09665 (MWG54_09665) - 1868178..1869125 (+) 948 WP_246962586.1 serine protease -
  MWG54_RS09670 (MWG54_09670) - 1869175..1869513 (+) 339 Protein_1822 MFS transporter permease -
  MWG54_RS31060 - 1869562..1869768 (+) 207 WP_001101741.1 hypothetical protein -
  MWG54_RS09675 (MWG54_09675) - 1869912..1870274 (+) 363 WP_001198794.1 DUF805 domain-containing protein -
  MWG54_RS09680 (MWG54_09680) - 1870474..1870698 (-) 225 WP_000162602.1 hypothetical protein -
  MWG54_RS09685 (MWG54_09685) - 1870783..1871130 (-) 348 WP_246962588.1 DUF4257 domain-containing protein -
  MWG54_RS09690 (MWG54_09690) - 1871327..1871853 (+) 527 Protein_1827 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10529.28 Da        Isoelectric Point: 5.1367

>NTDB_id=676582 MWG54_RS09660 WP_000648325.1 1867616..1867903(+) (abrB) [Bacillus cereus strain SEM-15]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSGQNITLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=676582 MWG54_RS09660 WP_000648325.1 1867616..1867903(+) (abrB) [Bacillus cereus strain SEM-15]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGGGCAGAATATTACATTAGCAAATGGAAATATTACAGTTGGCATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526