Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MWG54_RS06495 Genome accession   NZ_CP095377
Coordinates   1255616..1255939 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain SEM-15     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1250616..1260939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWG54_RS06470 (MWG54_06470) - 1250890..1252176 (+) 1287 WP_246962361.1 serine hydrolase -
  MWG54_RS06475 (MWG54_06475) - 1252367..1252936 (+) 570 WP_000767791.1 signal peptidase I -
  MWG54_RS06480 (MWG54_06480) - 1252997..1253584 (+) 588 WP_000172854.1 CalY family protein -
  MWG54_RS06485 (MWG54_06485) - 1253719..1254561 (+) 843 WP_246962363.1 DUF4047 domain-containing protein -
  MWG54_RS06490 (MWG54_06490) calY 1254949..1255542 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  MWG54_RS06495 (MWG54_06495) sinR 1255616..1255939 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  MWG54_RS06500 (MWG54_06500) - 1256019..1256153 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  MWG54_RS06505 (MWG54_06505) inhA1 1256496..1258886 (+) 2391 WP_001035946.1 M6 family metalloprotease immune inhibitor InhA1 -
  MWG54_RS06510 (MWG54_06510) - 1259058..1260425 (+) 1368 WP_246962364.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=676579 MWG54_RS06495 WP_000578885.1 1255616..1255939(-) (sinR) [Bacillus cereus strain SEM-15]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=676579 MWG54_RS06495 WP_000578885.1 1255616..1255939(-) (sinR) [Bacillus cereus strain SEM-15]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692