Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG552_RS27200 Genome accession   NZ_CP109446
Coordinates   6216732..6217511 (-) Length   259 a.a.
NCBI ID   WP_329137290.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01476     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6211732..6222511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG552_RS27185 (OG552_27200) - 6212053..6213273 (-) 1221 WP_329137283.1 serine/threonine-protein kinase -
  OG552_RS27190 (OG552_27205) - 6213273..6214478 (-) 1206 WP_329137285.1 FHA domain-containing protein -
  OG552_RS27195 (OG552_27210) - 6214624..6216627 (+) 2004 WP_329137287.1 ATP-dependent DNA helicase -
  OG552_RS27200 (OG552_27215) dinR/lexA 6216732..6217511 (-) 780 WP_329137290.1 transcriptional repressor LexA Regulator
  OG552_RS27205 (OG552_27220) nrdR 6218027..6218539 (+) 513 WP_329137292.1 transcriptional regulator NrdR -
  OG552_RS27210 (OG552_27225) - 6218676..6221564 (+) 2889 WP_329137294.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27937.77 Da        Isoelectric Point: 7.4755

>NTDB_id=676529 OG552_RS27200 WP_329137290.1 6216732..6217511(-) (dinR/lexA) [Streptomyces sp. NBC_01476]
MTATAESAAATLTAHDRSPDRIGPLDVMNEENAPKPARSLPGRPPGIRADSSGLTERQRRVIEVIRDSVQRRGYPPSMRE
IGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRASDAGHPQPTDTTGKPSASYVPLVGRIAAGAPLLAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKRDAGHVWLLPHNAAYQP
IPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=676529 OG552_RS27200 WP_329137290.1 6216732..6217511(-) (dinR/lexA) [Streptomyces sp. NBC_01476]
GTGACCGCCACCGCAGAGAGCGCCGCAGCGACATTGACCGCACATGACCGCTCCCCGGATCGAATCGGCCCGTTGGACGT
GATGAACGAAGAGAACGCCCCGAAGCCCGCGCGCTCGCTTCCCGGACGGCCCCCGGGTATTCGCGCCGACAGCTCGGGAC
TCACCGAACGTCAGCGGCGCGTAATCGAGGTCATCAGGGACTCGGTGCAGCGGCGGGGATATCCGCCGTCCATGCGGGAG
ATCGGCCAGGCCGTCGGTCTGTCCAGCACGTCCTCCGTGGCCCACCAGCTGATGGCCCTGGAGCGGAAGGGCTTTCTGCG
CCGCGATCCGCACCGGCCGCGCGCCTATGAGGTGCGCGCCTCGGACGCGGGCCACCCCCAGCCCACCGACACCACCGGCA
AGCCCTCCGCCTCCTATGTGCCGCTGGTCGGACGCATCGCGGCGGGCGCGCCCCTGCTGGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCGCTCCCCCGCCAACTGGTAGGCGACGGCGAACTGTTCGTGCTCAAGGTGGTCGGTGACTCGATGATCGAGGC
GGCGATCTGCGACGGCGACTGGGTGACGGTTCGCCGCCAGCCCGTCGCCGAGAACGGTGACATCGTCGCGGCGATGCTGG
ACGGCGAAGCGACGGTCAAGCGCTTCAAGCGGGACGCCGGCCATGTGTGGCTGCTGCCGCACAACGCGGCCTATCAGCCC
ATCCCGGGTGACGAGGCCACCATCCTCGGCAAGGTGGTGGCGGTGCTGCGCCGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(52-115)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

44.762

81.081

0.363