Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MRK34_RS15600 Genome accession   NZ_CP095364
Coordinates   3183895..3184509 (-) Length   204 a.a.
NCBI ID   WP_284960889.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain 19MO02SH05     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3178895..3189509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRK34_RS15585 (MRK34_15535) helD 3179119..3181173 (-) 2055 WP_234692928.1 DNA helicase IV -
  MRK34_RS15590 (MRK34_15540) - 3181299..3181745 (+) 447 WP_003831998.1 YccF domain-containing protein -
  MRK34_RS15595 (MRK34_15545) yccS 3181764..3183917 (+) 2154 WP_195995544.1 YccS family putative transporter -
  MRK34_RS15600 (MRK34_15550) sxy/tfoX 3183895..3184509 (-) 615 WP_284960889.1 TfoX/Sxy family DNA transformation protein Regulator
  MRK34_RS15605 (MRK34_15555) sulA 3184727..3185236 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  MRK34_RS15610 (MRK34_15560) ompA 3185594..3186652 (+) 1059 WP_137377301.1 porin OmpA -
  MRK34_RS15615 (MRK34_15565) matP 3186741..3187193 (-) 453 WP_032942905.1 macrodomain Ter protein MatP -
  MRK34_RS15620 (MRK34_15570) - 3187379..3189139 (+) 1761 WP_239606317.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23182.57 Da        Isoelectric Point: 8.6049

>NTDB_id=676525 MRK34_RS15600 WP_284960889.1 3183895..3184509(-) (sxy/tfoX) [Citrobacter portucalensis strain 19MO02SH05]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLLSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=676525 MRK34_RS15600 WP_284960889.1 3183895..3184509(-) (sxy/tfoX) [Citrobacter portucalensis strain 19MO02SH05]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGTTGCTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAGAAACAAAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTAGGCAAAATAAT
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.157

100

0.672