Detailed information NTG0676496

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG552_RS14150
• Genome accession: NZ_CP109446
• Coordinates: 3177036..3178031 (-)
• Length: 331 a.a.
• NCBI ID: WP_329132810.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01476
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3172036..3183031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG552_RS14120 (OG552_14130)	-	3172382..3173239 (+)	858	WP_329132798.1	S-methyl-5'-thioadenosine phosphorylase	-
OG552_RS14125 (OG552_14135)	-	3173820..3174092 (+)	273	WP_329132800.1	RcpC/CpaB family pilus assembly protein	-
OG552_RS14130 (OG552_14140)	-	3174144..3174458 (+)	315	WP_329132802.1	MscL family protein	-
OG552_RS14135 (OG552_14145)	-	3174586..3174852 (-)	267	WP_329132804.1	hypothetical protein	-
OG552_RS14140 (OG552_14150)	-	3174966..3176111 (+)	1146	WP_329132806.1	PLP-dependent cysteine synthase family protein	-
OG552_RS14145 (OG552_14155)	-	3176166..3176912 (-)	747	WP_329132808.1	VIT family protein	-
OG552_RS14150 (OG552_14160)	rpoS	3177036..3178031 (-)	996	WP_329132810.1	sigma-70 family RNA polymerase sigma factor	Regulator
OG552_RS14155 (OG552_14165)	-	3178242..3178751 (+)	510	WP_329132812.1	N-acetyltransferase family protein	-
OG552_RS14160 (OG552_14170)	-	3178838..3179623 (+)	786	WP_329132814.1	class III extradiol ring-cleavage dioxygenase	-
OG552_RS14165 (OG552_14175)	-	3179643..3180272 (+)	630	WP_329132816.1	hypothetical protein	-
OG552_RS14170 (OG552_14180)	-	3180474..3181982 (-)	1509	WP_329132818.1	MFS transporter	-
OG552_RS14175 (OG552_14185)	-	3182306..3182962 (-)	657	WP_329132820.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 36671.36 Da
• Isoelectric Point: 4.9694

>NTDB_id=676496 OG552_RS14150 WP_329132810.1 3177036..3178031(-) (rpoS) [Streptomyces sp. NBC_01476]
MATRAVARRNAGGTSSVRAAGGEVADRDLVGMYLDEIARTPLLDAAREVELSRDIEAGVYAERILAADPDLPAKAGGDAR
REELEALVAAGEKAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITR
SIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDAEPSEIAAELSSTPERVADVLDWARDPVSLNMSVDAEGETEFGD
LVEDGAAPSPEDSVLVMLRREELDGLIDRLDDRTASIIRARYGIVDGRERTLTEVGKEHGLTRERIRQIEKHALADLKRM
ARATGLDYEAA

Nucleotide

• Length: 996 bp

>NTDB_id=676496 OG552_RS14150 WP_329132810.1 3177036..3178031(-) (rpoS) [Streptomyces sp. NBC_01476]
ATGGCAACCCGTGCCGTCGCCCGTCGTAACGCAGGCGGGACCAGCAGCGTTCGCGCCGCAGGCGGGGAAGTCGCCGATCG
CGACCTCGTCGGCATGTACCTGGACGAGATCGCGCGCACACCGCTGCTCGACGCCGCCAGGGAGGTCGAGCTGTCCCGGG
ACATCGAAGCGGGCGTCTACGCCGAACGCATACTCGCCGCCGACCCCGATCTGCCCGCGAAAGCGGGCGGTGACGCCCGG
CGCGAGGAACTGGAAGCGCTCGTCGCCGCAGGTGAGAAGGCAAAGGACATCTTCATCCGGTCCAACCTCCGCCTCGTCGT
CGCCGTCGCCCGCCGCTACCCGCGCAGCGGCCTTCCGCTCCTCGACCTGATTCAGGAGGGGAACGCCGGCCTGGTCCGCG
CCGTCGAGAAATTCGACTACGCCAAGGGCTTCAAGTTCTCCACCTATGCGACCTGGTGGATCCGCCAGGCCATTACCCGG
TCCATCGCCGACCAGTCACGCACCATCCGGCTGCCCGTCCACCTCGTGGAGGAGCTAGGCCGCATCCGGCGCGTGCAGCG
CGAATTCAACCGTGAGAACGGCCGCGACGCGGAGCCCTCCGAGATCGCTGCCGAACTCAGCTCCACCCCGGAGCGCGTCG
CCGACGTCCTGGACTGGGCCCGTGACCCCGTGTCGCTGAACATGTCCGTGGACGCCGAAGGCGAGACCGAGTTCGGTGAC
CTCGTGGAGGACGGCGCCGCGCCGTCCCCGGAGGACTCCGTATTGGTGATGCTGCGCCGCGAGGAACTCGACGGCCTCAT
CGACCGGCTCGACGACCGCACCGCCTCCATCATCCGGGCCCGCTACGGCATCGTGGACGGCCGCGAACGCACTCTCACCG
AGGTCGGCAAGGAACACGGCCTCACCCGCGAACGCATCCGTCAGATCGAGAAGCACGCCCTCGCCGACCTCAAGCGCATG
GCGCGCGCGACCGGCCTGGACTACGAAGCCGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (267-318)

• Sigma-70 region 3 (Sigma70_r3) (177-253)

• Sigma-70 region 2 (Sigma70_r2) (98-167)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (28-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.604	91.541	0.363