Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG552_RS12395 Genome accession   NZ_CP109446
Coordinates   2777904..2778926 (-) Length   340 a.a.
NCBI ID   WP_329140761.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01476     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2772904..2783926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG552_RS12375 - 2773491..2775296 (+) 1806 WP_329132212.1 discoidin domain-containing protein -
  OG552_RS12380 (OG552_12395) - 2775460..2776461 (-) 1002 WP_329132214.1 acyltransferase domain-containing protein -
  OG552_RS12385 (OG552_12400) - 2776557..2776922 (-) 366 WP_329132215.1 MerR family transcriptional regulator -
  OG552_RS12390 (OG552_12405) - 2777081..2777776 (+) 696 WP_329132217.1 SDR family oxidoreductase -
  OG552_RS12395 (OG552_12410) cytR 2777904..2778926 (-) 1023 WP_329140761.1 LacI family DNA-binding transcriptional regulator Regulator
  OG552_RS12400 (OG552_12415) - 2779315..2780664 (+) 1350 WP_329132218.1 extracellular solute-binding protein -
  OG552_RS12405 (OG552_12420) - 2780776..2781729 (+) 954 WP_329132220.1 sugar ABC transporter permease -
  OG552_RS12410 (OG552_12425) - 2781733..2782656 (+) 924 WP_329132222.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36711.68 Da        Isoelectric Point: 5.9051

>NTDB_id=676490 OG552_RS12395 WP_329140761.1 2777904..2778926(-) (cytR) [Streptomyces sp. NBC_01476]
MNGRHSGRPTLEEVAVRAGVGRGTVSRVINGSPRVSDRAKAAVEAAVAELGYVPNRAARALAGNRTDAIALVIPEPETRL
FAEPYFSDIIRGIGAELADTDMQLLLTLIRTPKERSRFAQYLTAHRVDGVLLVSVHEDDPLPDLLEELEMPAVLNGRRSD
LESVSYVDADNVGGARAAVAHLIARGRRRVATITGPHDMYVARSRLDGYHQAVAEAGIAPTEALVAGGDFTEEGGRRAMR
ELLARTPDIDGVFAASDLMAAGARAVLRELGRRVPDDVALVGFEDSAIARHMDPALTSVRQPTEEMGRTMARVLLEEIAE
RASVRRHVVLATELVQRDSV

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=676490 OG552_RS12395 WP_329140761.1 2777904..2778926(-) (cytR) [Streptomyces sp. NBC_01476]
ATGAACGGGCGGCACAGCGGACGGCCCACCCTGGAAGAGGTGGCCGTCCGTGCCGGAGTGGGACGCGGTACGGTCTCCCG
GGTGATCAACGGCTCGCCGCGGGTCAGCGACCGGGCGAAGGCCGCGGTCGAGGCCGCCGTCGCGGAGCTGGGATACGTGC
CCAACCGGGCGGCCCGCGCGCTGGCCGGCAACCGGACCGACGCCATCGCCCTGGTCATCCCCGAGCCGGAGACCCGGCTC
TTCGCCGAGCCCTACTTCTCCGACATCATCCGCGGTATCGGCGCCGAACTCGCCGACACCGACATGCAGTTGCTGCTCAC
CTTGATCCGTACGCCCAAGGAGCGCTCCCGCTTCGCCCAGTACCTCACCGCCCACCGGGTGGACGGCGTGCTGCTGGTCT
CGGTGCACGAGGACGACCCGCTGCCCGACCTGCTGGAGGAGCTGGAGATGCCGGCGGTCCTCAACGGCCGCCGCAGCGAC
CTGGAATCGGTCTCCTACGTCGACGCGGACAACGTCGGCGGCGCGCGGGCGGCGGTCGCCCACCTGATCGCCCGCGGGCG
CCGCCGGGTCGCCACCATCACCGGGCCGCACGACATGTATGTCGCCCGCTCGCGCCTGGACGGCTACCACCAGGCGGTGG
CGGAGGCCGGGATCGCGCCCACCGAGGCGCTGGTGGCCGGCGGCGACTTCACCGAGGAGGGCGGGCGCCGGGCGATGCGC
GAACTCCTGGCCCGTACCCCGGACATCGACGGTGTCTTCGCCGCTTCCGACCTCATGGCGGCGGGCGCCCGGGCGGTGCT
GCGGGAACTCGGCCGCCGGGTGCCGGACGACGTCGCGCTGGTCGGCTTCGAGGACTCCGCCATCGCCCGCCACATGGACC
CGGCCCTGACCTCGGTGCGCCAGCCGACCGAGGAGATGGGCCGCACGATGGCCCGGGTCCTGCTGGAGGAGATCGCCGAA
CGGGCGTCGGTACGGCGTCATGTGGTGCTGGCCACCGAGCTGGTCCAGCGGGACTCGGTGTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-340)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.429

100

0.365