Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG552_RS11120 Genome accession   NZ_CP109446
Coordinates   2452985..2454721 (+) Length   578 a.a.
NCBI ID   WP_329131769.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01476     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2447985..2459721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG552_RS11080 (OG552_11095) - 2448061..2448819 (-) 759 WP_329131760.1 XRE family transcriptional regulator -
  OG552_RS11085 (OG552_11100) - 2449189..2449683 (+) 495 WP_329131762.1 hypothetical protein -
  OG552_RS11090 (OG552_11105) - 2449726..2449866 (+) 141 WP_329131764.1 hypothetical protein -
  OG552_RS11110 (OG552_11125) - 2450726..2451019 (+) 294 WP_329131766.1 YtxH domain-containing protein -
  OG552_RS11115 (OG552_11130) - 2451186..2452631 (+) 1446 WP_329131767.1 FGGY family carbohydrate kinase -
  OG552_RS11120 (OG552_11135) rcrP 2452985..2454721 (+) 1737 WP_329131769.1 ABC transporter ATP-binding protein Regulator
  OG552_RS11125 (OG552_11140) rcrQ 2454766..2456682 (+) 1917 WP_329140721.1 ABC transporter ATP-binding protein Regulator
  OG552_RS11130 (OG552_11145) - 2456739..2457923 (-) 1185 WP_329140723.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62321.64 Da        Isoelectric Point: 6.6156

>NTDB_id=676485 OG552_RS11120 WP_329131769.1 2452985..2454721(+) (rcrP) [Streptomyces sp. NBC_01476]
MLIRLLRSHLGPYKRPIGLLVLLQLVQTIATLYLPTLNADIIDNGVVKGDTGYIMSTGGIMLGVTVVQVCCAIGAVFFGA
RTAMAIGRDIRAAVFNKVQTFSAREVGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIVLALGQDVPLSAL
LLVVVPVLGISVSLIIRRLRPLFRTMQTRVDTVNRVLREQITGIRVIRAFVKDDYEQQRFGAANDELTSVSLATGRLLAL
MFPVVMAVVNVSSVAVLWFGAHRIDSGGMQIGALTAFLSYLMQILMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVL
PAHPVTTLRRHGELELSAVDFAYPGAEAAVLRGVDLVARPGQTTAVIGSTGSGKSTLLGLIPRLYDATGGRVLVDGEDVS
RLDAALLSQTVGLVPQKPYLFSGTVASNLRYGKPEATDEELWHALEVAQAKDFVSALEGGLDAPIAQGGTNVSGGQRQRL
AIARVLVRRPEIYLFDDSFSALDYATDAALRRALARETSEATVVIVAQRVSTIRDAHRIVVLDEGRVVGTGTHAELMLNN
ETYREIVLSQLTEQEAAA

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=676485 OG552_RS11120 WP_329131769.1 2452985..2454721(+) (rcrP) [Streptomyces sp. NBC_01476]
GTGCTGATCCGACTCCTGCGGTCCCATCTGGGGCCGTACAAACGCCCCATCGGTCTGCTGGTGCTGCTCCAGCTCGTGCA
GACCATCGCCACCCTCTACCTGCCCACCCTCAACGCGGACATCATCGACAACGGCGTCGTCAAGGGCGACACCGGCTACA
TCATGAGCACCGGCGGCATCATGCTCGGGGTGACCGTCGTCCAGGTGTGCTGTGCGATCGGCGCGGTCTTCTTCGGCGCC
AGGACCGCGATGGCGATCGGCCGGGACATCCGCGCGGCCGTCTTCAACAAGGTGCAGACGTTCTCCGCCCGCGAGGTCGG
CCAGTTCGGGGCGCCGTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTGGTGCTGATGACCTTCA
CGCTGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCATCGTGCTGGCGCTCGGCCAGGACGTCCCGCTCTCCGCGCTG
CTGCTGGTGGTGGTGCCGGTACTGGGCATCTCGGTGAGCCTGATCATCCGCAGGCTGCGGCCGCTCTTCCGCACCATGCA
GACCCGGGTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGTATCCGGGTGATCCGGGCGTTCGTCAAGGACG
ACTACGAGCAGCAGCGGTTCGGCGCCGCCAACGACGAGCTGACCTCGGTGTCGCTGGCCACCGGGCGCCTGCTGGCGCTG
ATGTTCCCGGTGGTGATGGCGGTGGTCAACGTCTCCAGCGTGGCGGTGCTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGCGCTCACCGCGTTCCTCAGCTATCTGATGCAGATCCTGATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGGGCCGAGGTCTGCGCCGAGCGCATCGAGGAGGTGCTGGACACCGAGTCCAGCGTCGTCCTC
CCGGCCCATCCGGTCACCACCCTGCGGCGGCACGGCGAACTGGAGCTGTCCGCCGTGGACTTCGCCTATCCGGGCGCCGA
GGCGGCGGTGCTGCGCGGGGTGGACCTGGTGGCCAGGCCCGGGCAGACCACCGCGGTGATCGGCTCCACCGGCAGCGGCA
AGTCGACGCTGCTGGGCCTGATCCCGCGGCTGTACGACGCCACCGGCGGCCGGGTGCTGGTGGACGGCGAGGACGTCTCG
CGGCTCGACGCGGCGCTGCTGTCGCAGACGGTGGGTCTGGTGCCGCAGAAGCCGTACCTCTTCTCCGGCACGGTCGCCTC
CAACCTCCGGTACGGCAAGCCGGAGGCGACCGACGAGGAACTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TCAGCGCGCTGGAAGGCGGCCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGACAGCGGCTG
GCCATCGCGCGGGTGCTGGTACGGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGCCGGGCGCTGGCCCGGGAGACCTCGGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCCACCATCC
GCGACGCGCACCGGATCGTCGTCCTCGACGAGGGCCGGGTGGTCGGCACCGGCACCCACGCCGAACTGATGCTGAACAAC
GAGACGTACCGGGAGATCGTGTTGTCGCAGCTGACCGAGCAGGAGGCCGCAGCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.441

94.983

0.403